Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D08
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 144 6e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 140 8e-35
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 28 0.65
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 2.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 2.6
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.6
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 6.1
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ... 25 6.1
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 8.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.0
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 8.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.0
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 8.0
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 144 bits (349), Expect = 6e-36
Identities = 77/150 (51%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Frame = +1
Query: 40 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 219
ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 220 AFRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 399
+ FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R++ +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116
Query: 400 AYRRAPPAGAPHDKKAD-VGPGSADVEFRG 486
YRRA +KK D PG FRG
Sbjct: 117 GYRRA-------EKKDDGAAPGGFAPSFRG 139
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 140 bits (340), Expect = 8e-35
Identities = 70/125 (56%), Positives = 93/125 (74%)
Frame = +1
Query: 40 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 219
ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 220 AFRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 399
+ FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R + D +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115
Query: 400 AYRRA 414
YRRA
Sbjct: 116 GYRRA 120
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 0.65
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 353 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 454
Q AGL+ HE L+ ++ AH + LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 126 CMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGLVPNY 19
CM +F+ + +E + T++F+ LGL+ N+
Sbjct: 92 CMFIFMEAIERFIEPPSVSNPTLMFFVGSLGLLSNF 127
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 26.2 bits (55), Expect = 2.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 445 PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 269
PSY + + +K ++L L L H + +LSLY + + +V+ V F
Sbjct: 992 PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051
Query: 268 GIQYPHLLNTS 236
+ P L+N S
Sbjct: 1052 QLSTPPLINVS 1062
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 361 RPDAPARTAEDRSAYRRAPPAGAPH 435
+P P + + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 259 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 363
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 343 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 486
RRG V D A Y R AP +G D G G D ++RG
Sbjct: 37 RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 159 VRDLLEIWMFGCMVVFLSYHDSLLE 85
+ + +IW FGC + + +H S E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 289 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 432
PP P + S T A APA A AY AP P
Sbjct: 58 PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 252 IC*IPVKMPKCELFLNISSRFK*LHSFDHL 163
+C +P++ P C L L +S+ S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 8.0
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 289 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 465
P P+ S R T V P +PAR SAY APPA G + G S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338
Query: 466 ADVEFRG 486
+ + G
Sbjct: 339 SSIPSSG 345
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 292 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 399
P I P ++ V TVR G+ PD P+ + R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,519
Number of Sequences: 5004
Number of extensions: 36828
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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