Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D08
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 144 3e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 144 3e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 139 9e-34
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.65
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 30 0.86
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 29 2.0
03_06_0519 - 34481751-34482722 29 2.0
12_02_0838 + 23557904-23558275 28 4.6
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 4.6
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 27 6.0
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 27 6.0
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 27 6.0
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 8.0
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 8.0
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 8.0
05_03_0373 - 13194723-13195847,13196219-13196809 27 8.0
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 8.0
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 144 bits (349), Expect = 3e-35
Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 8/154 (5%)
Frame = +1
Query: 40 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 220 AFRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 390
+++++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE 477
DR + R P GAP D + G A+ +
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 144 bits (349), Expect = 3e-35
Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 8/154 (5%)
Frame = +1
Query: 40 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 220 AFRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 390
+++++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE 477
DR + R P GAP D + G A+ +
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 139 bits (337), Expect = 9e-34
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 10/159 (6%)
Frame = +1
Query: 40 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 220 AFRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAE 390
+++H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE--FRG 486
DR + R P GAP D + G A+ + FRG
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRG 158
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 377 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 273
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 70 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAFRHFYWYL 246
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 247 TNEGIE-YLRIFLHLP 291
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 3 DPPGCNNSARGQDVDAKTKPCFYL 74
D P N+A G+D DAK P F+L
Sbjct: 116 DEPASENAAEGKDADAKGVPDFWL 139
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 343 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 471
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
>12_02_0838 + 23557904-23558275
Length = 123
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 6 PPGCNNSARGQDVDAKTKPCFY 71
P GC +ARG+ DA T+PC Y
Sbjct: 94 PRGC--AARGRGADAYTRPCTY 113
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 286 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 423
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 1 WIPRAAIIRHEAKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLE 147
W+ + R A++ P + R I Y F+ +V + + PK PD+E
Sbjct: 256 WVMMHKLTRRLARI--PDEVRTEIEPYFFEHASIVDEDNQKLPKLPDIE 302
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 232 FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVR--RGA---VGRPDAPARTAED 393
F+ YLT E I YL +HL + +T RS+ + R +G+ + +P PA + +D
Sbjct: 629 FFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDESRKYKGSLEYISQPSTPAGSNKD 684
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = +1
Query: 304 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR 483
PA + R V A AP + S RA P G PH G G +V R
Sbjct: 19 PAAAAAAGRRYGVHFSASSFIQAPLSALLEYSGILRADPGGGPHQVGGGGGGGGGEVSIR 78
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 289 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 423
PPE L+ + RRG +P P A + + +PPA
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPA 144
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 58 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 156
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 316 KRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 459
+R + T R GAV P PA D A +R PAG D A VGP
Sbjct: 74 RRKLPLATGRDGAVAGP--PADPVPD--ARQRRVPAGGGADPAAGVGP 117
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 298 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 429
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 349 GAVGRPDAPARTAEDRSAYRRAPP-AGAPHD 438
G GR R A D A RR P GAPHD
Sbjct: 105 GEAGRAGLRRRQAVDEVAARREEPQGGAPHD 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,378
Number of Sequences: 37544
Number of extensions: 253078
Number of successful extensions: 908
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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