Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D06
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    23   5.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    23   5.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   7.2  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    23   7.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    22   9.5  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    22   9.5  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    22   9.5  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    22   9.5  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    22   9.5  

>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 189 SPVAL*CKRNTLLSMHTVSSLSSPFTEPNTSNMAVR*PVAGASVAIEE 46
           +PVA     N + S+H   S+S+  + P T   +V   +   + A+++
Sbjct: 494 TPVAKTINLNEIESVHNAESVSTLSSIPRTEQTSVANRIPSKTAALQK 541


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -2

Query: 204 TRSR*SPVAL*CKRNTLLSMHTVSSLSSPFTEPNTSNMAVR*PVAGASVAIEESTGAHR 28
           TR   +P+A   K NTL       +L S  ++  TSN      V   S  +  ST A +
Sbjct: 2   TRESLAPIA--SKANTLSESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAKK 58


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 224 RSNEKRKRDQDDHQ*LCSASGTH 156
           RSN+   ++ D+H  LC  S +H
Sbjct: 894 RSNDNLGQNNDNHCVLCLQSASH 916


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 95  FDVFGSVKGLLKLDTVCIDNNVFRLHYKATGDHLDR 202
           FD+  ++  LL+LD + ID    +      GDHL R
Sbjct: 150 FDIDDAI-ALLRLDDLYIDTFEIKDVKTLQGDHLSR 184


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 226  REVTRSENAIKMITSSFVVQAEHIVVDAHSVELE*PLHG 110
            ++V    N I  + SSFV  A  + +  H V+    L+G
Sbjct: 2517 KQVNNRPNVISTLVSSFVKCAAKLELPPHLVKYLGKLYG 2555


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 92  MFDVFGSVKGLLKLDT---VCIDNNVFRLHYKATGDHL 196
           +FD   ++ GL    T   +C+ + +FRL +K  G  L
Sbjct: 432 VFDWLLAISGLSSFFTWGSICLSHIMFRLAFKKQGHSL 469


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 92  MFDVFGSVKGLLKLDT---VCIDNNVFRLHYKATGDHL 196
           +FD   ++ GL    T   +C+ + +FRL +K  G  L
Sbjct: 432 VFDWLLAISGLSNFFTWGSICLSHIMFRLAFKKQGHSL 469


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 165 RNTLLSMHTVSSL 127
           RNTLLS+H  +SL
Sbjct: 190 RNTLLSVHRTASL 202


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 226 REVTRSENAIKMITSSFVVQAEHIVVDAHSVELE*PLHGTEYV 98
           RE+  S N + + +  F       VVD H + +   + G E+V
Sbjct: 203 REIEESNNFVILKSDGFPTYHFANVVDDHLMHITHVIRGEEWV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,685
Number of Sequences: 5004
Number of extensions: 8562
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)