Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D06
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446...    27   2.7  
10_08_0142 - 15169825-15170538                                         27   2.7  
01_06_1570 + 38312319-38314259                                         26   4.7  
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764...    25   6.2  
03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492     25   6.2  
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    25   6.2  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    25   8.2  
03_05_1059 - 30020877-30021539,30022367-30022375                       25   8.2  

>11_04_0301 +
           16142236-16142945,16143748-16144247,16144557-16144649,
           16144879-16145005,16145265-16145468,16145587-16145692
          Length = 579

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 146 IDNNVFRLHYKATGDHLDRVFASRYF 223
           +D N  R+HY+   D   + FA +YF
Sbjct: 382 VDPNFARVHYRVQNDEEFQPFAGKYF 407


>10_08_0142 - 15169825-15170538
          Length = 237

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   EFGTRLDARRCAPVLSSIATDAPA 73
           E   R   RR AP  ++IATDAPA
Sbjct: 93  EHHPRKSGRRPAPARNAIATDAPA 116


>01_06_1570 + 38312319-38314259
          Length = 646

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 153 LSMHTVSSLSSPFTEPNTSNMAVR*PVAGASVAI 52
           L++ T SS SSP +  N +NMAV   +  AS  +
Sbjct: 226 LALSTPSSSSSPASSSNHTNMAVATAIPVASALL 259


>04_04_0256 +
           23974297-23974387,23974824-23974942,23975619-23976437,
           23976626-23976781,23976878-23977252
          Length = 519

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 5   FGTRLDA---RRCAPVLSSIATDAP 70
           +G R D    RRC P++  + TDAP
Sbjct: 460 YGPRCDQDKYRRCFPMIDGVLTDAP 484


>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
          Length = 509

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 117 FTEPNTSNMAVR*PVAGASVAIEESTGAH 31
           +  P T  + V  P+ GAS A+    GAH
Sbjct: 123 YRAPGTGELLVANPLTGASRALPSPPGAH 151


>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 127 QARHCVHRQQCVPLA 171
           QA+H +H +QCVP A
Sbjct: 424 QAKHELHTEQCVPAA 438


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 223  EVTRSENAIKMITSSFVVQAEHIVVDAHSVEL 128
            E+ ++   + ++ +S  VQAE  ++DA +V L
Sbjct: 1089 EIWKARECLNLLPNSISVQAETDIIDALTVRL 1120


>03_05_1059 - 30020877-30021539,30022367-30022375
          Length = 223

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 188 HQ*LCSASGTHCCRCTQCRA*VAPSRNRIR 99
           H  LC+     C  C  CR+ +  + NR+R
Sbjct: 48  HASLCAECSQRCDVCPICRSPIPDTGNRVR 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,202,313
Number of Sequences: 37544
Number of extensions: 57124
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)