Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D06
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    25   7.2  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    25   7.2  

>AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical
           protein F59D6.3 protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 118 GATQARHCVHRQQCVPLALQSYW 186
           GA    HC  +   VPLA  S+W
Sbjct: 312 GAIDTTHCQSQVNYVPLAYNSFW 334


>Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical
           protein C15C8.3 protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 109 FREGATQARHCVHRQQCVPLALQSYW 186
           F  G     HC      VPL+ Q++W
Sbjct: 268 FTVGGLDTTHCSSNVDWVPLSTQTFW 293


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 221 SNEKRKRDQDDHQ*LCSASG 162
           +NEK++R  +D Q  CS SG
Sbjct: 348 TNEKKQRTMEDAQTYCSQSG 367


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 221 SNEKRKRDQDDHQ*LCSASG 162
           +NEK++R  +D Q  CS SG
Sbjct: 348 TNEKKQRTMEDAQTYCSQSG 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,696
Number of Sequences: 27780
Number of extensions: 48835
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)