Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D04
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 82 3e-17
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 0.80
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 26 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 2.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 2.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 2.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 2.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 2.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 2.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 2.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 2.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 2.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 2.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 2.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 4.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 7.5
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 24 7.5
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 23 9.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 23 9.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 23 9.8
>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 81.8 bits (193), Expect = 3e-17
Identities = 35/56 (62%), Positives = 41/56 (73%)
Frame = +3
Query: 174 WEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIWSRYSL 341
W H AGPKT+ FWAPA KW LV+ G+GD R E LSI Q A+L ATG IW+R+SL
Sbjct: 10 WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSL 65
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 0.80
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 210 WAPAFKWGLVIGGVGDLNRPVESL 281
W+ K G++ GG+ +LN PV +
Sbjct: 530 WSSKLKKGILCGGMNELNEPVREV 553
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 96 YEGVGRVFWVYY 61
YEGV FWVYY
Sbjct: 299 YEGVPHCFWVYY 310
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 43 ILINIK--IVNPEDPS-NSLIIRKCR---KSIEPLLHRLTNLFHQEFVRYGSMKQVQK 198
+LIN K I+ P D II+K K I P + LTN+ + F G KQ+Q+
Sbjct: 895 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 126 GLYRFSTFSNYEGVGRVFWVYYFYVNKNLHDQSTSL 19
GL+ F +S + + YYF+ NKN ++S ++
Sbjct: 1063 GLHDFGVYSLKDEYYDLVDPYYFHYNKNEREESDTI 1098
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 208 KNIVFGPASCSHSGRILDGTNLSVDVIRAL 119
KN F S H G++ N VDVI+AL
Sbjct: 1473 KNNPFWWTSQRHDGKLWQLNNYRVDVIQAL 1502
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 28 RLVM*ILINIKIVNPEDPSNSLIIRKCRKSIEPLLHR 138
RLV+ IL+N+ P+D +++++ K+++ L R
Sbjct: 267 RLVLAILVNLIDKAPKDTISTMLLEHVDKAVQLLQKR 303
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 292 WGIDKDSTGLFKSPTPPITNPHLKAGAQKNIV 197
W I + +SP PP+T L AGA ++
Sbjct: 356 WFIMQTLQIYIQSPRPPLTPKRLLAGAASMLI 387
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 328 DQIRPVAARDADWGIDKDSTGLFKSPTPPITN 233
+Q P+ W + KD T KSP P N
Sbjct: 690 EQENPLLFDSLSWHVPKDDTRNDKSPLVPTWN 721
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 243 GGVGDLNRPVESLSIPQSAS 302
GG+ +L+ P SL +P SAS
Sbjct: 132 GGLNNLSSPSSSLYLPGSAS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,133
Number of Sequences: 5004
Number of extensions: 30642
Number of successful extensions: 100
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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