Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D04
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 80 5e-16
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 71 3e-13
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 66 7e-12
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 48 3e-06
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 46 8e-06
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 0.72
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 28 2.2
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 26 8.9
11_03_0155 + 10871512-10871949,10874414-10874695,10874782-108749... 26 8.9
05_03_0402 + 13533055-13533501 26 8.9
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 79.8 bits (188), Expect = 5e-16
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +3
Query: 156 SRIRPLWEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIWSRY 335
S+++ W H AGPKTI FWAP FKWG+ I V D +P E +S PQ +A +G+IW+R+
Sbjct: 67 SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARW 126
Query: 336 SL 341
+
Sbjct: 127 GM 128
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 70.5 bits (165), Expect = 3e-13
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +3
Query: 171 LWEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIWSRYSL 341
L+ + G TI FWAP FKWG+ I V D +P E +S PQ ++A TG+IWSRYS+
Sbjct: 41 LYGIKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSM 97
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 66.1 bits (154), Expect = 7e-12
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 201 IFFWAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIWSRYSL 341
+ FWAP FKWG+ I V D +P E +S PQ ++A TG+IWSRYS+
Sbjct: 20 VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSM 66
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 47.6 bits (108), Expect = 3e-06
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 165 RPLWEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRPVESLS 284
+ W GP+T FW P WG V+ G+ D+N+P E +S
Sbjct: 6 KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 46.0 bits (104), Expect = 8e-06
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3
Query: 189 GPKTIFFWAPAFKWGLVIGGVGDLNRPVESLSIPQSASL 305
GPKT FW P WG V+ G+ D+N+P E +S +A L
Sbjct: 14 GPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL 52
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 123 ALITSTDKFVPSRIRPLWEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRP 269
AL+ +FV + P++ T+ FWAP F++ + GG P
Sbjct: 86 ALVNRVSEFVNAGFSPVFMK----LTVLFWAPTFRYDMFTGGPSQQRSP 130
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 256 SPTPPITNPHLKAGAQKNIVFGPA-SCSHSG 167
SP P NP + GAQ+N+ GP H G
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVYGMGHHG 274
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 52 NIKIVNPEDPSNSLIIRKCRKSIEPLLHRLTNLFHQEFVRYGSMKQVQKQYSSGLQP-SN 228
N K+ N D L++R+C I+ HR L + G M +SG++P +
Sbjct: 187 NNKVFNSLDEPAKLVLRRCASDIDIWSHRYLQLTSTLHICKGRM-------TSGMEPVDD 239
Query: 229 GDW 237
+W
Sbjct: 240 SEW 242
>11_03_0155 +
10871512-10871949,10874414-10874695,10874782-10874951,
10875068-10875165,10875775-10877135
Length = 782
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 229 HLKAGAQKNIVFGPASCSHSGRI 161
HLK G + NI F + C H R+
Sbjct: 732 HLKVGEKANIRFDISPCEHFSRV 754
>05_03_0402 + 13533055-13533501
Length = 148
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 106 CRKSIEPLLHRLTNLFHQEFVR 171
CR P HR+T+ H+EF+R
Sbjct: 39 CRGECPPQEHRITSRDHREFLR 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,339
Number of Sequences: 37544
Number of extensions: 197257
Number of successful extensions: 571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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