Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D04
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    93   5e-20
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    37   0.004
Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ...    27   3.5  
U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical pr...    26   6.1  

>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
 Frame = +3

Query: 114 IYRALITSTDKFV----PSRIRPLWEHEAGPKTIFFWAPAFKWGLVIGGVGDLNRPVESL 281
           +Y+AL  + DKFV    P+  +P W H AGPKT+FFWAP  KW L+  G+ DL RP + L
Sbjct: 7   LYQALCKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKL 66

Query: 282 SIPQSASLAATGLIWSRYSL 341
           S+ Q+++L ATG IW+RY L
Sbjct: 67  SLYQNSALFATGAIWTRYCL 86


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 207 FWAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIWSRYS 338
           FW P   WGL +  +GDL +  + +S P +++L     ++ R++
Sbjct: 29  FWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFA 72


>Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical
           protein T23G11.7a protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 43  ILINIKIVNPEDPSNSLIIRKCRK 114
           IL N++I+NP D  +S+   KC K
Sbjct: 258 ILTNLQIINPIDQKSSIFTEKCWK 281


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +1

Query: 1    ARGGTRQRSRLVM*ILINIKIVNPEDPSNSLIIRKCRKSI-----EPLLHRLTNLFHQEF 165
            AR  TR+ SR+   I ++I+I NP DP   +++     SI      PLL  +    H+  
Sbjct: 1246 ARESTRRASRIR--ISVDIQITNPPDPDVQVVLFPDSVSILNSGSTPLLADILMTRHKTV 1303

Query: 166  VRYGSMKQVQKQYSSGLQPSNGD 234
                 +   Q++ ++G+    GD
Sbjct: 1304 PPQSIVYSTQQRGANGVTIRRGD 1326


>AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ion
           channel protein 30 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 155 WNKFVSRCNKGSIDFRHFLI 96
           W++ +SRC K S+ F  FLI
Sbjct: 496 WDQIISRCEKVSLSFYLFLI 515


>U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical
           protein F09C12.6 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 210 WAPAFKWGLVIGGVGDLNRPVESLSIPQSASLAATGLIW 326
           W  A +  L++ G+GD+  PV  + I    +LA    IW
Sbjct: 102 WQCALEPWLILRGIGDIWPPVVQMVIGIQRALAVFAPIW 140


>Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical
           protein T26E4.5 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 61  IVNPEDPSNSLIIRKCRKSIEPLLHRLTNLFHQEFV 168
           ++N  D +N   IR  +K I+PL  +L   FH + +
Sbjct: 93  VINATDSNN---IRNLQKRIQPLFPKLVEQFHLKII 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,339,743
Number of Sequences: 27780
Number of extensions: 164462
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)