Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D03
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    27   1.3  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   5.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   8.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    24   8.9  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 88  YPYFSEMNLPDLRPTVTSGHI 150
           YP  + +N+P L PT+T+G+I
Sbjct: 50  YPAHTVINMPALSPTMTTGNI 70


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 76  LAAGYPYFSEMNLPDLRPTVTSGHINNVSP 165
           +  G+P F + N+ DL   V +G    +SP
Sbjct: 286 MLCGFPPFFDENIKDLASKVVNGEFEFLSP 315


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 292  RLTESSRCLLSRRQLPRTIRPLSLILDHR 206
            +L E    + S+  L R I+P +++LDHR
Sbjct: 1144 QLLEGLAYIHSQHILHRDIKPANILLDHR 1172


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   EGNTGDI*SRPSSPTNPSGKVIQS*P 82
           EG   +   RPS P  P+G V QS P
Sbjct: 322 EGAPSNAQFRPSLPATPNGSVPQSNP 347


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 274 AKTQLGAYYPYVNMSIPVRVFKQVLHQF---ILDKDITR 381
           AKT L  Y+ ++N + P+   KQ +  F    +DK++ +
Sbjct: 175 AKTCLDWYFRFINCNWPIFYKKQYMESFEKLYIDKNLVK 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,986
Number of Sequences: 5004
Number of extensions: 30405
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)