Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D03
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395...    35   0.025
09_04_0242 + 15969091-15969128,15970172-15970409,15971439-159716...    31   0.31 
06_01_1188 + 10219546-10219664,10220855-10223660                       29   1.2  
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     28   2.9  
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    27   6.6  
03_02_0987 - 12995754-12996347,12996440-12997684,12997772-129978...    27   8.7  
02_05_0271 + 27342468-27343577                                         27   8.7  

>05_05_0353 -
           24338717-24338946,24339046-24339134,24339421-24339500,
           24339768-24339902,24340231-24340461,24340540-24340634,
           24340734-24340819,24341467-24341570,24341674-24341805,
           24341883-24341999,24342170-24342229,24342779-24342820,
           24342878-24342952,24343127-24343177,24343256-24343436,
           24343548-24343594,24343710-24343775
          Length = 606

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = +1

Query: 169 LIQASCCVQSGFSGGPILRITXXXXXXXXXXXXXNAKTQLGAYYPYVNMSIPVRVFKQVL 348
           L Q +  V  G SGG +L                NAK   G+  P++N SIP +  + V 
Sbjct: 472 LDQTTAAVHPGASGGVLL----DSLGRMVGLITSNAKHGGGSTIPHLNFSIPCKSLEMVF 527

Query: 349 HQFILDKDITRLRVIDNDKDIIQAQWNLLP 438
            ++    D   L  +D   +++ + W L P
Sbjct: 528 -KYSAKGDFKILEQLDKPNEVLSSVWALAP 556


>09_04_0242 +
           15969091-15969128,15970172-15970409,15971439-15971668,
           15972235-15972469,15973133-15973224,15973333-15973336
          Length = 278

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
 Frame = +1

Query: 19  GHLKPAVFSDEPVGKGDSILAAGYPYFS----EMNLPDLRPTVTS-----GHINNVSPS- 168
           G   P  F  +PV KGD ++  GYP+ S      NL     +VT+     G + +  P  
Sbjct: 126 GEYPPVAFDHQPVRKGDPLVLLGYPWPSSKTGSTNLGSFFGSVTNEAALVGKLKDTPPEE 185

Query: 169 ---LIQASCCVQSGFSGGPILR 225
               + A      G SG P+ R
Sbjct: 186 HMMTVNADYSGAGGSSGAPVFR 207


>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 16  WGHLKPA-VFSDEPVGKGDSILAAGYPYFSEMNLPDLRPTVTSGHINNV 159
           W HL+   +F D PVG+  ++ +  +     ++L D +   T   I N+
Sbjct: 552 WNHLRSVTLFGDRPVGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNI 600


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 61  KGDSILAAGYPYFSEMNLPDL--RPTVTSGHINNVS 162
           KG S++  GYP       P +   P  TSGHI N+S
Sbjct: 381 KGKSLIGNGYPLEPCSLGPSIMCNPVSTSGHIGNIS 416


>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
            21051775-21051828,21052077-21052184,21052653-21052802,
            21052914-21053258,21053361-21054801,21054844-21055675,
            21057060-21057325,21057530-21059603,21060172-21060442,
            21060556-21060990
          Length = 2059

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 295  KRLTESSRCLLSRRQLPRTIR 233
            K +T+S +C L R +LP TIR
Sbjct: 1908 KEVTKSLQCALDRMELPATIR 1928


>03_02_0987 -
           12995754-12996347,12996440-12997684,12997772-12997838,
           12997982-12998073
          Length = 665

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 LRPTVTSGHINNVSPSLIQASCCVQSGFS 207
           LRPT+TS H N   P+ + +   V+ G S
Sbjct: 19  LRPTLTSRHANEWPPTDVSSDLTVEVGTS 47


>02_05_0271 + 27342468-27343577
          Length = 369

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = +1

Query: 31  PAVFSDEPVGKGDSILAAGYPYFSEMNLPDLRPTVTSGHINNVSPSLIQASCCVQSGFSG 210
           P  F D   G G      G P+   M LPDL+   T G  +   P L        S  S 
Sbjct: 79  PQGFGDGGDGSGPHGFLQGKPFHGLMQLPDLQGNGTGGP-SPSGPGLYNLGYIANSANSS 137

Query: 211 G 213
           G
Sbjct: 138 G 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,921,690
Number of Sequences: 37544
Number of extensions: 208126
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)