Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D03
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    27   4.5  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    27   4.5  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    27   4.5  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    27   4.5  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical protein
            T20G5.5 protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 349  HQFILDKDITR-LRVIDNDKDIIQAQWNLLP 438
            H+FI  + + R LRVIDN K ++Q  + + P
Sbjct: 1193 HEFIEPQSLIRNLRVIDNQKKLMQLSYEIEP 1223


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 RDSKQREDSVRRLLSVREH 314
           +D + RED+ RR+L+ REH
Sbjct: 283 QDRRDREDNARRILAQREH 301


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 RDSKQREDSVRRLLSVREH 314
           +D + RED+ RR+L+ REH
Sbjct: 283 QDRRDREDNARRILAQREH 301


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 RDSKQREDSVRRLLSVREH 314
           +D + RED+ RR+L+ REH
Sbjct: 283 QDRRDREDNARRILAQREH 301


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 RDSKQREDSVRRLLSVREH 314
           +D + RED+ RR+L+ REH
Sbjct: 283 QDRRDREDNARRILAQREH 301


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 315 HVHVRIVSA*LSLRVAYYHADNFHGRFARYP*YW 214
           ++H++ ++   S RVA YH  +FH  F   P  W
Sbjct: 106 YIHLKALT---SCRVATYHLTSFHTSFIANPQQW 136


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 315 HVHVRIVSA*LSLRVAYYHADNFHGRFARYP*YW 214
           ++H++ ++   S RVA YH  +FH  F   P  W
Sbjct: 106 YIHLKALT---SCRVATYHLTSFHTSFIANPQQW 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,188,699
Number of Sequences: 27780
Number of extensions: 173296
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)