Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D02
         (159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...    28   1.0  
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...    28   1.0  
Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 74  SLKKICVCMKYNAFSFVFSS 133
           SL  I +C+KYN  +FVFSS
Sbjct: 112 SLNLIQMCLKYNVKNFVFSS 131


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 74  SLKKICVCMKYNAFSFVFSS 133
           SL  I +C+KYN  +FVFSS
Sbjct: 110 SLNLIQMCLKYNVKNFVFSS 129


>Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical
           protein K06A4.4 protein.
          Length = 239

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 108 LYFIHTQIFFKLKRSKLHRRETTIA 34
           L+F+   IF++ KR KL R  T IA
Sbjct: 96  LFFVIALIFYRTKRRKLIRLMTGIA 120


>U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical
           protein F07C4.6 protein.
          Length = 204

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 29  MLAIVVSLLCNFDLFSLKKICVCMKYNAFSFVFSS 133
           +++++V LL +  L  ++    C  YN  SFV+S+
Sbjct: 4   VVSVLVVLLASSSLAQIQGELNCTAYNGTSFVYSA 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,041
Number of Sequences: 27780
Number of extensions: 45860
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)