Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D02
         (159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   3.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   3.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   7.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   7.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    18   9.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 123 TKLNALYFIHTQIFFK 76
           TKL   YF HT I ++
Sbjct: 33  TKLQPTYFHHTYIIYE 48


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 123 TKLNALYFIHTQIFFK 76
           TKL   YF HT I ++
Sbjct: 33  TKLQPTYFHHTYIIYE 48


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 106 ILHTYTNFF*TEEIEIT*KGDDNS 35
           ++H Y NF   +E  +  K   N+
Sbjct: 531 LVHNYMNFMQMDEFVVNLKSGSNT 554


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 106 ILHTYTNFF*TEEIEIT*KGDDNS 35
           ++H Y NF   +E  +  K   N+
Sbjct: 531 LVHNYMNFMQMDEFVVNLKSGSNT 554


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 106 ILHTYTNFF*TEEIEIT*KGDDNS 35
           ++H Y NF   +E  +  K   N+
Sbjct: 157 LVHNYMNFMQMDEFVVNLKSGSNT 180


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 93  TQIFFKLKRSKLHRRETTIAN 31
           T++ FK+   K H +  T+ N
Sbjct: 349 TEVRFKVHDPKAHSKGGTLEN 369


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 93  TQIFFKLKRSKLHRRETTIAN 31
           T++ FK+   K H +  T+ N
Sbjct: 349 TEVRFKVHDPKAHSKGGTLEN 369


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 131 KRIQN*THYTSYIHKFFLN*RDRNYIEG 48
           K   N     SY+ +FF N   + Y  G
Sbjct: 294 KNFNNDDDIKSYLIQFFANKNQKFYERG 321


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 103 LHTYTNFF*T 74
           LHT TN+F T
Sbjct: 76  LHTATNYFVT 85


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 38  IVVSLLCNFDLFSLKKICV 94
           ++V L C FD  +   IC+
Sbjct: 279 LLVRLACMFDAQTNSMICL 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,000
Number of Sequences: 438
Number of extensions: 504
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)