Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D01
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 152 1e-38
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 152 1e-38
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 149 1e-37
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 0.53
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 0.70
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 2.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 3.7
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 24 4.9
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 24 4.9
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 4.9
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 6.5
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 24 6.5
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 24 6.5
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 24 6.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 24 6.5
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 6.5
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 24 6.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 23 8.6
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 8.6
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 23 8.6
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 23 8.6
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 152 bits (368), Expect = 1e-38
Identities = 68/98 (69%), Positives = 82/98 (83%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 209
K +VID +GHLLGRLASV+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 210 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHL 103
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 152 bits (368), Expect = 1e-38
Identities = 68/98 (69%), Positives = 82/98 (83%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 209
K +VID +GHLLGRLASV+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 210 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHL 103
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 149 bits (361), Expect = 1e-37
Identities = 65/98 (66%), Positives = 81/98 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 209
K ++ID +GHL+GRLAS +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 210 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNL 103
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 0.53
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 57 HLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFF 161
H L + +V K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 0.70
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 199 LLRRNDINFNLFLKKLPEMLICSQRT 122
+L NDIN N L KLP ++ ++RT
Sbjct: 37 VLANNDINENTVLLKLPPNILINKRT 62
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 170 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNY*GQSTEQV 57
F +I GNV LF+T+ H QQ L+ + E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 165 NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 281
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 102 EGNKVVVVRCEQINISGNFFRNKLKFMSFL 191
E +V++ CE + +FF KLK+ +
Sbjct: 80 ERKVLVLIHCESLQSFDSFFAQKLKYADLI 109
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 4.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 75 ASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN 212
AS +++ +V++ R + ISG F RN LKF + N+N
Sbjct: 450 ASNPCRIIFFSQEVLIYRDD---ISGRFQRNSLKFGKTPQGTSNIN 492
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 24.2 bits (50), Expect = 4.9
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Frame = +3
Query: 63 LGRLASVIAKVLLE------------GNKVVVVRCEQINISGNFFRN 167
LGRLAS IA L+ G+ VVV C +I ISG N
Sbjct: 26 LGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLEN 72
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 126 RCEQINISGNFFRNKL-KFMSF 188
RC +INI+G+ F N + F SF
Sbjct: 220 RCSKINITGSVFDNFIPSFFSF 241
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 23.8 bits (49), Expect = 6.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 97 CWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSG 261
CWK + + +++ L F ISS S+ + + + S L +S+LH SSG
Sbjct: 319 CWKNSINYRYMIISLDFSDISSP---SVMN--IHPLYSFSSKSLESSKLHYSSSG 368
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 23.8 bits (49), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 175 FNLF-LKKLPEMLICSQRTTTTLFPSSRTLAITEASR 68
F+LF L+++PE + +FPSS T I + SR
Sbjct: 27 FDLFSLEEIPEYIPRPVHALLFVFPSSGTKTIYKGSR 63
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 244 GALK*KGPRAGLTLHLLRRNDINFNLFLKKL 152
G+ + + R G L RRND FN F L
Sbjct: 640 GSRRQEAQRLGRILRAKRRNDEGFNAFFYSL 670
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 23.8 bits (49), Expect = 6.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 193 RRNDINFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITEASRP 65
RR +INF P M + +TTT+FP L S P
Sbjct: 73 RRYEINFGQIYLSRPTMTE-ADGSTTTMFPQEARLRNLTYSSP 114
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 322 SLLNAFFPRSVLCGIIPLTVFQRIFDGAL 236
S L AF P+ LC +IPL ++ G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 205 LHLLRRNDINFNLFLKKLPEMLICSQRTTT 116
++L+R+ND N +KK+ + LI ++ T
Sbjct: 316 VYLVRKNDTNRIYAMKKISKKLIVRKKEVT 345
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 244 GALK*KGPRAGLTLHLLRRND---INFNLFLKKLPEMLICSQRTTTTL 110
G + KG L RN+ INF L ++ + ICSQ + T+
Sbjct: 64 GRKRRKGDPLELQSQFEERNETDAINFQLLVRNVVRYAICSQTSHNTI 111
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 130 QRTTTTLFPSSRTLAITEASRPSKCPRPSITMAL 29
Q T PS+ T A+T ++P+ PS +++
Sbjct: 316 QSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSV 349
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 301 PRSVLCGIIPLTVFQRIFDGAL 236
P V GI P T+F + FD +L
Sbjct: 163 PSMVREGIDPFTIFAKAFDNSL 184
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 243 PSKILWKTVRGMIPHKTERGKNALRRL 323
P I+ + V+G++P K+ K AL+ +
Sbjct: 18 PRSIIMRLVKGVLPEKSLVQKEALKAM 44
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 23.4 bits (48), Expect = 8.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 97 CWKETKLWSFVVNRL 141
CW+ WSF+V+ L
Sbjct: 162 CWRSIAWWSFLVDSL 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,618
Number of Sequences: 5004
Number of extensions: 27019
Number of successful extensions: 78
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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