Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D01
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 142 7e-35
07_01_0071 - 522920-523063,524125-524212,524289-524677 140 3e-34
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 69 6e-13
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 31 0.21
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 1.1
02_05_0442 - 29044736-29046604 28 1.5
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 28 1.5
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 27 2.6
05_03_0120 - 8597333-8597554,8599413-8599524,8599607-8599773,859... 27 2.6
06_01_0779 - 5823389-5823787 27 4.5
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 26 7.8
04_03_0600 - 17856213-17856382,17856434-17857393,17857644-178578... 26 7.8
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 26 7.8
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 26 7.8
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 7.8
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 26 7.8
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 26 7.8
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 26 7.8
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 142 bits (343), Expect = 7e-35
Identities = 64/106 (60%), Positives = 81/106 (76%)
Frame = +3
Query: 6 VKMTGFSNKAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 185
V +G +V+D R H+LGRLAS+IAK LL G +VVVVRCE+I +SG R K+K++
Sbjct: 2 VSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLR 61
Query: 186 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL
Sbjct: 62 FLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARL 107
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 140 bits (338), Expect = 3e-34
Identities = 62/106 (58%), Positives = 79/106 (74%)
Frame = +3
Query: 6 VKMTGFSNKAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 185
V +G + +V+D R H+LGRLAS++AK LL G +VVVVRCE++ ISG R K+K++
Sbjct: 2 VSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLR 61
Query: 186 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANL 107
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 69.3 bits (162), Expect = 6e-13
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +3
Query: 204 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARL 41
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 31.1 bits (67), Expect = 0.21
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Frame = +3
Query: 39 VIDGRGHLLGRLASVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 182
V+D +LGRLAS IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 183 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIP 284
R R P +I+ VRGM+P
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP 634
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 121 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 300
+ V+NR T + G N L S++ ++ S + VDL + LH + + ++ L V
Sbjct: 35 ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94
Query: 301 GRMH 312
+H
Sbjct: 95 NMLH 98
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 148 EMLICSQRTTTTLFPSSRTLAITEASRPSKCPRPSITMALLLKPVIF 8
E L+ +TT T+ ++ A SRP + P P+ + P+ F
Sbjct: 61 EQLVAKTKTTRTVIATTNGRAAPSQSRPRRRPAPAAAASAASLPMTF 107
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 178 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITEASRPSKCPRPSITM 35
NF++ L + +IC+Q T FP+ +L I S+ S P P TM
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTM 260
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 39 VIDGRGHLLGRLASVIAKVL 98
V D +G +LGRLAS IA VL
Sbjct: 649 VFDAKGQVLGRLASQIAVVL 668
>05_03_0120 -
8597333-8597554,8599413-8599524,8599607-8599773,
8599857-8599928,8600748-8600780,8601051-8601089
Length = 214
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 39 VIDGRGHLLGRLASVIAKVL 98
V D +G +LGRLAS IA VL
Sbjct: 42 VFDAKGQVLGRLASQIAVVL 61
>06_01_0779 - 5823389-5823787
Length = 132
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 91 RSCWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVM--STQPVDL 228
R CW T W R+ A +S T +LCHS ++ S P D+
Sbjct: 78 RCCW--TSWWIVTAPRMMLSAPTSYTWLNLCHSMASTILVRSNPPRDV 123
>04_04_0717 - 27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 178 LCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSVG 303
+CH K+V+ T+ LF ++ QKS G LS G
Sbjct: 886 ICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFG 927
>04_03_0600 -
17856213-17856382,17856434-17857393,17857644-17857808,
17858357-17858399
Length = 445
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 51 RGHLLGRLAS-VIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN 212
+ H++G + + +++G + + RC++IN S K+ F+ L C VN
Sbjct: 144 KAHIIGEGGQGTVYRAVIDGTTMAIKRCKEINES-----KKMDFVQELVILCRVN 193
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 163 GTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE 276
G +LCH F++ + +D+ S++ +++S R +E
Sbjct: 808 GEQKNLCHCFLQSLRDKTTMDILDSQVVEEASHREIDE 845
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 39 VIDGRGHLLGRLASVIAKVLLEGNKVVVVRC 131
V+D GHL S+ A VLL G + + C
Sbjct: 972 VLDCLGHLPSEFRSLAADVLLAGLRTITKNC 1002
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 75 ASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 185
A A ++ + VVVV CE+ I+G N +K +S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 106 PSSRTLAITEASRPSKCPRPSITMALLLKPVIF 8
P RT + + PS CP + ALLL P F
Sbjct: 141 PPIRTPVLPAHALPSSCPLEPLEFALLLLPSPF 173
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 154 ISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE 276
++ GT+ H VKD + L LH + + RP EE
Sbjct: 370 VAGGTHARAPHRHVKDGRGRRETSLSIVALHARRARRPGEE 410
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 51 RGHLLGRLASVIAKVLLEGNKVVVVRCEQ 137
+GHLL R + + LEG KV + CEQ
Sbjct: 86 KGHLLDRHGLYMCDLCLEGRKVFI--CEQ 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,445
Number of Sequences: 37544
Number of extensions: 180663
Number of successful extensions: 450
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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