Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D01
(325 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 167 2e-42
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 167 2e-42
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 27 2.3
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 26 7.2
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 25 9.5
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 25 9.5
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 25 9.5
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 25 9.5
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 167 bits (406), Expect = 2e-42
Identities = 73/102 (71%), Positives = 89/102 (87%)
Frame = +3
Query: 18 GFSNKAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 197
G SN+AI+IDG+ HLLGRLAS++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 198 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ L
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNL 103
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 167 bits (406), Expect = 2e-42
Identities = 73/102 (71%), Positives = 89/102 (87%)
Frame = +3
Query: 18 GFSNKAIVIDGRGHLLGRLASVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 197
G SN+AI+IDG+ HLLGRLAS++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 198 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 323
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ L
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNL 103
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 181 INFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITEASRPSKCPRPSIT 38
+ + F +P + TTT+ FP+S T T A +PS +P+ T
Sbjct: 200 VRYATFSPNIPMTTSTTPTTTTSTFPTSTTEKSTTA-QPSTTTKPTTT 246
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 145 MLICSQRTTTTLFPSSRTLAITEASRPSKCPRPS 44
++I +R L P T AIT P+ P P+
Sbjct: 1488 LIILERRPIILLLPDKSTTAITPIHSPANAPTPT 1521
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 130 QRTTTTLFPSSRTLAITEASRPSKCPRPSIT 38
Q TTTT PS+ T+ TE+S S P+ T
Sbjct: 133 QTTTTTTIPSTTTM--TESSSTSTTASPTTT 161
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 243 PSKILWKTVRGMIPHKTERGKNALRR 320
PSK++W+ G IP + + LR+
Sbjct: 1003 PSKVVWRFENGTIPEEAANFEKILRK 1028
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 243 PSKILWKTVRGMIPHKTERGKNALRR 320
PSK++W+ G IP + + LR+
Sbjct: 990 PSKVVWRFENGTIPEEAANFEKILRK 1015
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 243 PSKILWKTVRGMIPHKTERGKNALRR 320
PSK++W+ G IP + + LR+
Sbjct: 988 PSKVVWRFENGTIPEEAANFEKILRK 1013
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 130 QRTTTTLFPSSRTLAITEASRPSKCPRPSIT 38
Q TTTT PS+ T+ TE+S S P+ T
Sbjct: 133 QTTTTTTIPSTTTM--TESSSTSTTASPTTT 161
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 243 PSKILWKTVRGMIPHKTERGKNALRR 320
PSK++W+ G IP + + LR+
Sbjct: 1003 PSKVVWRFENGTIPEEAANFEKILRK 1028
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 112 LFPSSRTLAITEASRPSKCPRPSITMA 32
+ PS+ T + T ++R S PRP+ T A
Sbjct: 266 IHPSASTTSFTSSARLSTPPRPTTTAA 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,678,003
Number of Sequences: 27780
Number of extensions: 152383
Number of successful extensions: 366
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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