Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C24
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.19
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.34
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 0.59
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 1.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 2.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 3.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 3.1
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 25 3.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 3.1
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 3.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 4.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 5.5
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 23 7.3
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 23 9.6
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 23 9.6
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 23 9.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 23 9.6
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 23 9.6
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 23 9.6
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 184 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFS 297
LD P ++ + +YIGNL D+ ED+I +FS
Sbjct: 15 LDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFS 52
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.9 bits (59), Expect = 0.34
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 235 RLYIGNLTNDVTEDEIQNLFS 297
RL++GNL NDV ++ + FS
Sbjct: 31 RLFVGNLGNDVNDESLYQAFS 51
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 0.59
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 193 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQN 288
P + + ++ G +YIGN+ D T +EI N
Sbjct: 310 PVLQKPDLIMTGNRTVYIGNIHADTTIEEICN 341
Score = 26.6 bits (56), Expect = 0.78
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 214 VKFNGRSR-LYIGNLTNDVTEDEIQ 285
V+ +G R +++GNL N +TEDEI+
Sbjct: 199 VQQSGACRNVFLGNLPNGITEDEIR 223
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 1.8
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +1
Query: 232 SRLYIGNLTNDVTEDEIQNLFS 297
+++++G + D TE+E +N F+
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFN 268
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
+Y+GNL +E+E++ LFS
Sbjct: 428 IYVGNLPPSTSEEELKVLFS 447
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 235 RLYIGNLTNDVTEDEIQNLF 294
RL++ NLT ED++++LF
Sbjct: 324 RLFLRNLTYSCAEDDLKSLF 343
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 232 SRLYIGNLTNDVTEDEIQNLF 294
+ +YI NL ++TE E +LF
Sbjct: 261 TNVYIKNLDTEITEQEFSDLF 281
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
+Y+GNL+ TE++I LFS
Sbjct: 34 VYVGNLSFYTTEEQIYALFS 53
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 282 DFIFSDIISEVTNIQTAPTVELNFRLIYGR*IKQWPC*IFQLI 154
DFI + ++ +++ TA +V +RL G+ I+ + +LI
Sbjct: 466 DFIIEESLTNFSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLI 508
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 118 MKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNG 228
+ P+Q+ EM L N L+ L L++PA Q +++ G
Sbjct: 230 LMPVQKCEMHLLNILEQLQPDCLEVPA-GQRQLRCTG 265
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 229 RSRL-YIGNLTNDVTEDEIQNLFS 297
RS++ ++ LTNDVT+ E+++ F+
Sbjct: 242 RSKIVHVAGLTNDVTQLELESWFT 265
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 244 IGNLTNDVTEDEIQNLFS 297
+GNL N VT+++I+N S
Sbjct: 1631 LGNLLNLVTDEDIENAMS 1648
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
+Y+GN+ VT +E+Q+ F+
Sbjct: 57 VYVGNVDYSVTPEELQSHFA 76
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLF 294
+YI L DVT DEI+ +F
Sbjct: 112 VYIQGLPLDVTVDEIEEVF 130
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 133 FELVSCCLVHP 101
F VSCCL HP
Sbjct: 256 FNNVSCCLFHP 266
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 94 LSYYYFAVDYVVVHFLRLVLDQIVCFLVSLV 2
L YY +AVDYV L V + L SLV
Sbjct: 63 LRYYNYAVDYVNNKLLMDVYPPLGKLLFSLV 93
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLF 294
+++GNL+ + TED++ F
Sbjct: 368 VFVGNLSFNATEDDLSTAF 386
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 23.0 bits (47), Expect = 9.6
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 109 QDNMKPIQREEMMLANKLKDLTGPL---LDLPA-IDQSEVKFNGRSRLYIGNLTNDVTED 276
Q ++ +REE + NK ++L L +D+ DQS+V+ + + LT DV D
Sbjct: 32 QIEIRKQKREESL--NKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSD 89
Query: 277 EIQ 285
+I+
Sbjct: 90 DIE 92
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 142 FPLFELVSCCLVHPWNLSYYYFAVDY 65
FP+ LV CLV + + Y+A Y
Sbjct: 244 FPIVFLVGMCLVDTTDGALMYYAYSY 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.135 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,051,154
Number of Sequences: 5004
Number of extensions: 15677
Number of successful extensions: 48
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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