Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C24
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 4e-04
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 40 4e-04
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 4e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 0.79
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 28 1.0
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 28 1.0
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 26 4.2
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 26 4.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 26 5.6
U21320-6|AAA62538.4| 234|Caenorhabditis elegans Hypothetical pr... 26 5.6
AL032627-16|CAD56606.1| 301|Caenorhabditis elegans Hypothetical... 26 5.6
AL032627-15|CAB63358.1| 278|Caenorhabditis elegans Hypothetical... 26 5.6
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 26 5.6
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 26 5.6
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 26 5.6
AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical ... 26 5.6
AL021479-7|CAN99702.1| 234|Caenorhabditis elegans Hypothetical ... 25 7.4
AL021479-6|CAA16322.2| 207|Caenorhabditis elegans Hypothetical ... 25 7.4
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z78015-3|CAB01435.1| 448|Caenorhabditis elegans Hypothetical pr... 25 9.7
AC024200-17|AAF36002.2| 432|Caenorhabditis elegans Hypothetical... 25 9.7
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 217 KFNGRSRLYIGNLTNDVTEDEIQNLFS 297
KF GR RL++GNL N+V E E++ LFS
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 217 KFNGRSRLYIGNLTNDVTEDEIQNLFS 297
KF GR RL++GNL N+V E E++ LFS
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1
Query: 217 KFNGRSRLYIGNLTNDVTEDEIQNLFS 297
KF GR RL++GNL N+V E E++ LFS
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFS 137
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.7 bits (61), Expect = 0.79
Identities = 12/27 (44%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
Frame = +1
Query: 223 NGRSR--LYIGNLTNDVTEDEIQNLFS 297
N RS+ +++GN++ DV+ED I+++FS
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFS 39
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
LY+GNL + VTED I LF+
Sbjct: 48 LYVGNLDSTVTEDFIATLFN 67
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
LY+GNL + VTED I LF+
Sbjct: 48 LYVGNLDSTVTEDFIATLFN 67
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 238 LYIGNLTNDVTEDEIQNLFS 297
LY+GNL + VTED I LF+
Sbjct: 48 LYVGNLDSTVTEDFIATLFN 67
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 112 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 225
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 112 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 225
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 208 SEVKFNGRSRLYIGNLTNDVTEDEIQNL 291
S + + ++++IG L N +TED+++ L
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKEL 310
>U21320-6|AAA62538.4| 234|Caenorhabditis elegans Hypothetical
protein K04G7.11 protein.
Length = 234
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 127 IQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTED 276
++R E +L D P+ I++ KFN + Y G T D+ +D
Sbjct: 181 VKRREQYHRRRLYDPDAPI---DYINEKNKKFNKKLDKYYGKYTEDIKDD 227
>AL032627-16|CAD56606.1| 301|Caenorhabditis elegans Hypothetical
protein Y41C4A.12b protein.
Length = 301
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 276 IFSDIISEVTNIQTAPTVELNFRLIYGR*IK 184
I+SDI SE+TN+ T VE + IY R ++
Sbjct: 67 IYSDISSEMTNVYT-EAVEAYDQQIYSRCVR 96
>AL032627-15|CAB63358.1| 278|Caenorhabditis elegans Hypothetical
protein Y41C4A.12a protein.
Length = 278
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 276 IFSDIISEVTNIQTAPTVELNFRLIYGR*IK 184
I+SDI SE+TN+ T VE + IY R ++
Sbjct: 67 IYSDISSEMTNVYT-EAVEAYDQQIYSRCVR 96
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 208 SEVKFNGRSRLYIGNLTNDVTEDEIQNL 291
S + + ++++IG L N +TED+++ L
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKEL 310
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 208 SEVKFNGRSRLYIGNLTNDVTEDEIQNL 291
S + + ++++IG L N +TED+++ L
Sbjct: 258 STIVVDSANKIFIGGLPNYLTEDQVKEL 285
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 208 SEVKFNGRSRLYIGNLTNDVTEDEIQNL 291
S + + ++++IG L N +TED+++ L
Sbjct: 261 STIVVDSANKIFIGGLPNYLTEDQVKEL 288
>AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical
protein Y73C8B.5 protein.
Length = 97
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 139 EMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFS 297
E + + L++LTG +L L + QSE F + + + ++ E++ LFS
Sbjct: 3 ETICIDALQELTGAMLSLRGLAQSEENFKKVFQEFDEDGNGFISVAELEPLFS 55
>AL021479-7|CAN99702.1| 234|Caenorhabditis elegans Hypothetical
protein Y22F5A.3b protein.
Length = 234
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 130 QREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEI 282
++ E A K D G + D P I + G YI +TND EDE+
Sbjct: 126 EKTEFAKAWKKDDDGGVISDQPRITVGDSSM-GPQGGYITKITNDAREDEM 175
>AL021479-6|CAA16322.2| 207|Caenorhabditis elegans Hypothetical
protein Y22F5A.3a protein.
Length = 207
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 130 QREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEI 282
++ E A K D G + D P I + G YI +TND EDE+
Sbjct: 99 EKTEFAKAWKKDDDGGVISDQPRITVGDSSM-GPQGGYITKITNDAREDEM 148
>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
protein Y70C5A.2 protein.
Length = 1037
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 160 LKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNL 291
++D + LL LP +DQ+ +KF S +Y + + EI NL
Sbjct: 468 VEDASQVLLVLPLVDQNILKFFVISSIYKQGKKSIIDVQEIINL 511
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 223 NGRSRLYIGNLTNDVTEDEIQNLFS 297
+G +Y+GN TE+E+ N FS
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFS 26
>Z78015-3|CAB01435.1| 448|Caenorhabditis elegans Hypothetical
protein R02D5.6 protein.
Length = 448
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 97 NLSYYYFAVDYVVVHFLRLVLDQIVCFLVSLV 2
NLS + Y HF+ +VL ++ F +LV
Sbjct: 203 NLSNEFPTFRYATFHFIFIVLTYVIAFFSTLV 234
>AC024200-17|AAF36002.2| 432|Caenorhabditis elegans Hypothetical
protein Y71F9AL.1 protein.
Length = 432
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 211 EVKFNGRSRLYIGNLTNDVTEDEIQN 288
+ K+N R R YIGN T D IQ+
Sbjct: 174 KTKYNLRDRCYIGNTTMDPELSFIQS 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.135 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,695,731
Number of Sequences: 27780
Number of extensions: 85229
Number of successful extensions: 240
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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