Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C23
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 30 0.11
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 0.76
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 2.3
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 24 7.1
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 24 7.1
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 24 7.1
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 24 9.4
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 24 9.4
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 24 9.4
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 30.3 bits (65), Expect = 0.11
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 98 VNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGF-KIAMGAFDKTRPPVAAGAT 274
VN + ++MG + S TF V + VL+G G + GA D T +
Sbjct: 240 VNIVGQYRSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGALDITDADI-RNIN 298
Query: 275 GLAQRAXPSEATKDSLERKTFGVPIAKHQAVAFML 379
LA++ E SL +G K QA+ +L
Sbjct: 299 KLARKKNVFELLSTSLAPSIYGYEYVK-QAILLLL 332
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 0.76
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 140 SDTRGITFEDVRIPK---ENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRAXPSEAT 310
++T+ + + V PK + + G GA + K P++ G TG + + SE T
Sbjct: 408 NNTQDVNRQSVSSPKVVSSSSVTGSGASGRKVYTPQSKNPFPISQGVTGTSSKFSASEVT 467
Query: 311 KDS 319
+D+
Sbjct: 468 EDN 470
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 273 VAPAATGGRVLSKAPIAILNPAPSPINTFSLGILTSSNVIPRVS 142
+AP G+VLSK+P+ +PS I S+ + ++ +P++S
Sbjct: 50 LAPKPLAGQVLSKSPLPPF--SPSKIMNRSISVPPTNISVPQIS 91
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 2.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 61 FHWLHSGKRLGWSQPW 108
F W+ G+ LGWS W
Sbjct: 294 FIWIGFGRMLGWSDEW 309
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 27 LTLILSVLPARLSLAS*WKEIGLESTLGARNKIWVSVL 140
+T LS A LSL + G ++ L A +W+++L
Sbjct: 686 ITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINIL 723
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 225 AILNPAPSPINTFSLGIL 172
A N APSP+ TF+ G L
Sbjct: 420 ASTNAAPSPVGTFNRGTL 437
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 24.2 bits (50), Expect = 7.1
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 71 FIVERDWAGVNPGRKEQNMGQRASDTRG-ITFEDVRIPKENVLIGEGAGFKIAMGAFDKT 247
F E +W V+ + A++ G + F ++ P+ V +G+G G ++ +
Sbjct: 47 FTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDV 106
Query: 248 RPPVAAGATGL 280
PV+ T +
Sbjct: 107 YSPVSGTVTSI 117
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 14 VLARTNPDPKCPASKAFTGFIVERDWAGVNPGRKEQ 121
++AR +PD K AS + T + GVN + +Q
Sbjct: 266 LIARNHPDVKSQASVSSTASTTGQTVKGVNADQTQQ 301
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 84 EIGLESTLGARNKIWVSVLQTHVVSRSKT 170
E+GL TL +W + Q++ +RS T
Sbjct: 236 EMGLGKTLQTITVVWTLLKQSYYANRSST 264
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 137 ASDTRGITFEDVRIPKENVLIGEGAGFKIAMG 232
A D + T++ R+P E ++ GAG A G
Sbjct: 266 AKDGKVTTYKPNRVPSEEIVDTNGAGDAFAGG 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,616
Number of Sequences: 5004
Number of extensions: 28773
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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