Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C23
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 68 2e-12
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 54 5e-08
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 36 0.011
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 33 0.10
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 31 0.31
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758 31 0.41
05_01_0212 + 1601861-1603600 30 0.72
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 29 0.95
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 29 0.95
01_07_0117 + 41171919-41172395 29 1.7
01_06_0024 + 25690428-25690637,25694488-25694549,25694667-256947... 29 1.7
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 28 2.2
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 2.2
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 28 2.2
06_03_0361 + 19877324-19877718,19877821-19878067 28 2.9
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 28 2.9
09_02_0138 + 4860354-4860833 27 5.1
08_02_1350 - 26312275-26313613,26314833-26315110 27 5.1
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 27 5.1
01_02_0054 - 10677564-10677671,10679605-10680264 27 6.7
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 26 8.9
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 68.1 bits (159), Expect = 2e-12
Identities = 40/105 (38%), Positives = 54/105 (51%)
Frame = +2
Query: 53 SKAFTGFIVERDWAGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMG 232
SK T FI+E+ G + +K +G R SDT + FE+ +P ENVL EG G + M
Sbjct: 206 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKGVYVMMS 265
Query: 233 AFDKTRPPVAAGATGLAQRAXPSEATKDSLERKTFGVPIAKHQAV 367
D R +AAG GL Q A A +R+ FG PI + Q +
Sbjct: 266 GLDLERLVLAAGPIGLMQ-ACLDVAVPYVRQREQFGRPIGEFQFI 309
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 53.6 bits (123), Expect = 5e-08
Identities = 29/68 (42%), Positives = 39/68 (57%)
Frame = +2
Query: 155 ITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRAXPSEATKDSLERKT 334
ITFE+VR+P N+L+GEG GF+IA G R G A+R + + +L R T
Sbjct: 625 ITFENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGM-NLMVERALSRTT 683
Query: 335 FGVPIAKH 358
FG IA+H
Sbjct: 684 FGKKIAQH 691
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 35.9 bits (79), Expect = 0.011
Identities = 29/103 (28%), Positives = 44/103 (42%)
Frame = +2
Query: 53 SKAFTGFIVERDWAGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMG 232
+K GFIV + G+ + E +G R I F V +P+E+ L G + F+
Sbjct: 219 TKQLNGFIVRKGAPGLKATKIENKIGLRMVQNGDIVFNKVFVPEEDRLPGVNS-FQDISK 277
Query: 233 AFDKTRPPVAAGATGLAQRAXPSEATKDSLERKTFGVPIAKHQ 361
+R VA G++ + ERK FGVP+ Q
Sbjct: 278 VLAISRVMVAWQPIGISMGVF-DVCHRYLKERKQFGVPLVAFQ 319
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 32.7 bits (71), Expect = 0.10
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = +2
Query: 68 GFIVERDWAGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKT 247
GFIV++ G+ + E +G R I V +P E+ L G + F+ +
Sbjct: 201 GFIVKKGAPGLKCTKIENKIGLRMVQNADIVLNKVFVPDEDRLTGINS-FQDINKVLAMS 259
Query: 248 RPPVAAGATGLAQRAXPSEATKDSLERKTFGVPIAKHQ 361
R VA G++ + ERK FGVP+A Q
Sbjct: 260 RIMVAWQPIGISMGVFDM-CHRYLKERKQFGVPLAAFQ 296
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 31.1 bits (67), Expect = 0.31
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +2
Query: 50 ASKAFTGFIVERDWAGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAM 229
++ GFIV G+ + E R I EDV +P ++ L G + F+ +
Sbjct: 128 SNNQINGFIVNGGSPGLKISKIENKTSLRVVQNCDILLEDVFVPDDDRLPGANS-FQDLV 186
Query: 230 GAFDKTRPPVAAGATGLAQRAXPSEATKDSL-ERKTFGVPIAKHQ 361
A + VA + G+A A +A L ERK FG P+A Q
Sbjct: 187 KALSFSCVIVAWISIGIA--AGVYDACLRYLGERKQFGAPLAAFQ 229
>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
Length = 415
Score = 30.7 bits (66), Expect = 0.41
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -2
Query: 333 VLRSRESLVASLGXARCANPVAPAATGGRVLSKAPIAILNPAP-SPINTFSLGILTSSNV 157
VL R S A+ + P++P PI+ P P SP N + T+
Sbjct: 200 VLSPRPSPAAAALMVKPTPPISPRFAAAAAAG-VPISPRTPTPGSPYNKHAAAAATARPP 258
Query: 156 IPRVSEAR*PIFCSLRPGLTPAQSLST 76
P + + + S+ P +TP S ST
Sbjct: 259 HPAAATSSCSVAYSMSPAMTPTSSSST 285
>05_01_0212 + 1601861-1603600
Length = 579
Score = 29.9 bits (64), Expect = 0.72
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 282 ANPVAPAATGGRVLSKAPIAILNPAPSPINTFSLGILTSSNVIPRVSEAR*PIFCSLR-P 106
A P+ AA GG + A +L A + ++ S L + +++PR + A I L+ P
Sbjct: 86 ATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSP 145
Query: 105 GLTPAQS 85
++P+ S
Sbjct: 146 AVSPSSS 152
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 29.5 bits (63), Expect = 0.95
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +2
Query: 20 ARTNPDPKCPASKAFTGFIVERDWAG--VNPGRKEQNMGQRASDTRGITFEDVRIPKEN- 190
A T+ P P+ TG + G V+ K Q +G A +DV + E
Sbjct: 306 AGTSAGPLLPSGGGATGSASVQATGGSAVSVDAKGQPIGASAKGK-----DDVIVSAEGA 360
Query: 191 VLIGEGAGFKIAMGAFDKTRPPVAAGATG 277
+L G GA +A G D T PVA+G G
Sbjct: 361 ILAGSGAIIALADGKGDSTAGPVASGTGG 389
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 237 KAPIAILNPAPSPINTFSLGILTSSNVIPRVSEAR 133
+ P+ PAPSP + + + SS+V+PR++ ++
Sbjct: 160 RTPVKERPPAPSPARSTASSLRKSSSVLPRITRSK 194
>01_07_0117 + 41171919-41172395
Length = 158
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 276 PVAPAATGGRVLSKAPIAILNPAPS 202
P P GGR + AP A+L PAP+
Sbjct: 44 PTGPGHGGGRHAAPAPAAVLPPAPA 68
>01_06_0024 +
25690428-25690637,25694488-25694549,25694667-25694715,
25697066-25697182,25697305-25697358,25697813-25697898,
25698058-25698163,25698354-25698488
Length = 272
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 384 SASMNATAWCFAIGTPNVLRSRESLVASL 298
+A+ A +WCFA TP RSR ++VASL
Sbjct: 5 AAAAAAQSWCFATVTP---RSRATVVASL 30
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -2
Query: 333 VLRSRESLVASLGXARCANPVAPAATGGRVLSKAPIAILNPAPSPINTFSLGI 175
V+R RE+L S+ AR A A + G VLS+ + L PAP+ + G+
Sbjct: 133 VVRRREAL-RSVRVARAAGSAAGSGDGAGVLSRLIRSNLAPAPAVDGAAATGV 184
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 20 ARTNPDPKCPASKAFTGFIVERDWAGVNPGRK 115
A+ +P +CP+ GF + +A ++PGRK
Sbjct: 348 AQQSPSERCPSFGRADGFRIMDPYASLSPGRK 379
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 282 ANPVAPAATGGRVLSKAPIA-ILNPAPSPINT 190
+NP PAA L+ AP A NP P+P +T
Sbjct: 23 SNPAPPAAAAAETLAPAPPAPNPNPTPTPAST 54
>06_03_0361 + 19877324-19877718,19877821-19878067
Length = 213
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 170 VRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATG 277
VR V++ GA +MGA+++ P AAG G
Sbjct: 110 VREEAVRVVVARGASMGWSMGAWEEAEPHAAAGGRG 145
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = -2
Query: 366 TAWCFAIGTPNVLRSRESL-VASLGXARCANP------VAPAATGGRVLSKAPIAILNPA 208
T WCFA + L E L L A+ NP VA + GG + PIA+ PA
Sbjct: 229 TFWCFADLSSLDLPVMEGLDKLLLAMAKGVNPEENGVMVASSTNGGIASQRQPIALRTPA 288
Query: 207 P 205
P
Sbjct: 289 P 289
>09_02_0138 + 4860354-4860833
Length = 159
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 64 HWLHSGKRLGWSQPWAQGTKYGSACFRHTW 153
HWL +G RL WS + T R W
Sbjct: 129 HWLPAGTRLRWSPRETEATPVEGKQLRRCW 158
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 372 NATAWCFAIGTPNVLRSRESLVASLGXARCANPVAPAATGG 250
+ + WCF G + R + S++A+ G A A PA GG
Sbjct: 6 DGSGWCFCSGGAKLERIKNSVLAAKGAAVAAVSF-PAGGGG 45
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 300 LGXARCANPVAPAATGGRVLSKAPIAILNPAPSPINT 190
+G RC+NP GGRV S + + P P+ +
Sbjct: 174 VGERRCSNPSGKKQQGGRVRSSSAQQMAPIRPKPLGS 210
>01_02_0054 - 10677564-10677671,10679605-10680264
Length = 255
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 339 PNVLRSRESLVASLGXARCANPVAPAATGGR 247
P V ++ A+ ARC P AP ATG R
Sbjct: 120 PQVAPDMDAAYAAQLRARCPPPAAPPATGRR 150
>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 119 QNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRA-X 295
++ +++ T G+ E++ EN I ++ GA PP TG+ + A
Sbjct: 1110 ESFTKQSKFTYGLVVEEITTRDENNNICTHGSRQLPSGALSMIGPPTTLSGTGVDRMAFL 1169
Query: 296 PSEATKDSLE 325
+ T+D+ E
Sbjct: 1170 QANITRDNTE 1179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,849
Number of Sequences: 37544
Number of extensions: 226266
Number of successful extensions: 671
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -