Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C23
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   2.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 68  GFIVERDWAGVNPGRKEQNMGQR 136
           G  VE DW  V+  R+ +N+G++
Sbjct: 391 GSSVEFDWCAVSCLRELRNLGRK 413


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  RTNPDPKCPASKAFTGF 73
           RTN DP+   ++A+T F
Sbjct: 281 RTNSDPRMILTEAYTEF 297


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 256 GSGWCYWVSTASPSQRS 306
           GSG CY+ S  S S+ S
Sbjct: 304 GSGECYFSSDLSESETS 320


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 81  STMKPVKALLAGHLGSGLVRANTKS 7
           S + PVK +   ++ SGL +A   S
Sbjct: 622 SVVGPVKGIYQHNVASGLTKARGHS 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,548
Number of Sequences: 438
Number of extensions: 2040
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)