Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C22
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.17
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 1.2
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 26 1.6
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 2.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 2.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 2.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 2.8
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 2.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 2.8
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 3.8
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 3.8
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 23 8.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 23 8.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 23 8.7
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.17
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +1
Query: 88 APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 261
AP K L K+ N+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 13 APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 1.2
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 118 ANDLKSQLE---GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 285
+ND++S G L DVDT ++VL E Q+ DGI +FDA +KH
Sbjct: 182 SNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 1.6
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 103 DLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK--TQKSLFDGIEKFDATS 276
DL KV ND + + S + N I+LP E++ T + L D + + + TS
Sbjct: 144 DLTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
Query: 277 LKHT 288
+T
Sbjct: 204 SSNT 207
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 2.8
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 112 KVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTE 291
K N+ +EG T R + + + L S ED+ + T+ S+ + + ++HT
Sbjct: 111 KRPNETDISVEGVVT---RVHERHISVALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTM 167
Query: 292 TQEKNPLPD 318
+ K +P+
Sbjct: 168 LEFKRSIPE 176
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 233 WVFSVATSSADGRTIFSFVSTSRKQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 233 WVFSVATSSADGRTIFSFVSTSRKQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 233 WVFSVATSSADGRTIFSFVSTSRKQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 217 ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 318
+T QKSL D E DA LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 233 WVFSVATSSADGRTIFSFVSTSRKQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 3.8
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 GFNTSCLRDV-DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEK 303
G+N + +++V D ++KI+L + Q+ LF+ +K T+ H+E +EK
Sbjct: 77 GYNITFVQNVTDIDDKIILRAR--------QQYLFEEYKKQQGTNKSHSEAREK 122
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 300 LLGFCMFQTGGIEFLN 253
L+G+CMF GI +LN
Sbjct: 618 LIGYCMFTFLGISYLN 633
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 224 SVATSSADGRTIFSFVSTSRKQLVLNPSS*LLRSLA 117
++AT+ DG F + ++ VLNPS + S++
Sbjct: 247 TLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSIS 282
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 23.4 bits (48), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 229 FFQWQHLQPTVGRSSHLC 176
F ++QH+ + R SHLC
Sbjct: 217 FLEYQHIYNDLERLSHLC 234
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 23.4 bits (48), Expect = 8.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 19 RRP-LFNLPSIFIPD*TMACSVGDAPSLKDLPKVANDL 129
RRP LF+ P++ + +GD+PSL + +VAN +
Sbjct: 101 RRPSLFDRPNLVSRS---SSRLGDSPSLSPVAQVANPI 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,214
Number of Sequences: 5004
Number of extensions: 28034
Number of successful extensions: 84
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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