Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C22
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 0.47
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 29 0.81
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 29 0.81
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 28 1.9
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 27 2.5
06_03_0355 + 19822110-19824491 27 4.3
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 26 5.7
02_01_0620 + 4650572-4650671,4650755-4650891,4651012-4651205,465... 26 5.7
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 26 7.6
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 26 7.6
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 26 7.6
02_04_0098 + 19701999-19702185,19703698-19704551,19704732-197048... 26 7.6
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 0.47
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 124 DLKSQLEGFNTSCLRDVDTNEKIVL 198
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 100 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 192
K+L + +DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 100 KDLPKVANDLKSQLEGFNTSCLRDVDTNEKI 192
K+L + +DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -3
Query: 254 IPSNRDFWVFSVATSSADGRTIFSFVSTSRKQLVLNPSS*LLRSLATFGKSFREGAS 84
+P ++ F + S+ SSADG T ++K L + S LRSLA+F + + +S
Sbjct: 149 LPYHQQFQLSSL--SSADGLTNIKTDPENKKLLENSASVESLRSLASFSSKYSQSSS 203
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 187 KIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKN 306
K VLPS E++A ++ S GIE+ + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>06_03_0355 + 19822110-19824491
Length = 793
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 163 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHT 288
+ +V +++LP+ E+VATE + +E DA SL T
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAET 243
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 305 FFSWVSVCFKLVASNFSIPSNR---DFWV-FSVATSSADGRTIF 186
F W S+ F + S F + ++R D W+ + V TS+A RTIF
Sbjct: 902 FAGW-SIAFLICLSVFLMQASRNGNDLWLTYWVDTSTASSRTIF 944
>02_01_0620 +
4650572-4650671,4650755-4650891,4651012-4651205,
4651287-4651571,4652111-4652169,4652469-4652540,
4652817-4652925,4653239-4653980
Length = 565
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 195 DDLLICVDVSQAARVESLQLTFEIIGHLRQVLQG 94
DD+L CVD + AA ++L + ++ HL VL G
Sbjct: 342 DDILPCVDTAAAA--DALARSKDVTHHLVTVLNG 373
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 184 EKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLP 315
E+I+ +++ KT + ++DG F TSL + + Q+ P P
Sbjct: 222 EEILSSNSQSADNIKTDQHVYDGGAPFPGTSLPN-KAQQPQPYP 264
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 118 ANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 231
A+ + LE +SCL D + NE+ ED AT +
Sbjct: 160 ASKPRCNLESAASSCLTDTNENERASARMMEDQATSSS 197
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 112 KVANDLKSQLEGFNTSCLRDVDTNEK 189
K NDLKSQ+ +C+ D DT E+
Sbjct: 145 KSVNDLKSQIVVLPEACVTDGDTVEQ 170
>02_04_0098 +
19701999-19702185,19703698-19704551,19704732-19704890,
19705290-19705537,19705837-19705927,19706066-19706251
Length = 574
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -1
Query: 295 GFLYVSNWWHRISQYRRIG-IFGFFQWQH 212
G LY W+H QY G ++G W H
Sbjct: 63 GPLYYKGWYHLFYQYNPKGAVWGNIVWAH 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,273
Number of Sequences: 37544
Number of extensions: 207355
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -