Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C20
         (111 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           38   9e-04
03_01_0547 + 4093196-4093657,4094267-4095148                           38   9e-04
03_01_0544 + 4082528-4082989,4083585-4084466                           38   9e-04
03_01_0543 + 4076981-4077442,4078145-4079026                           38   9e-04
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    29   0.70 
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510...    26   5.0  
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    25   6.6  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    25   6.6  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 26  EEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           +EVSS   ++GYNP  + FVPISG+ GDN
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDN 200


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 26  EEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           +EVSS   ++GYNP  + FVPISG+ GDN
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDN 200


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 26  EEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           +EVSS   ++GYNP  + FVPISG+ GDN
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDN 200


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 26  EEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           +EVSS   ++GYNP  + FVPISG+ GDN
Sbjct: 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDN 200


>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
            4816803-4816830,4817136-4817339,4817352-4819136,
            4820358-4821139
          Length = 1241

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 13   FEEIRRSLFYIRNWLQSGCRR 75
            + + R+++ Y+RNW+  GCR+
Sbjct: 957  YRDKRKAMDYVRNWICPGCRK 977


>04_04_0838 -
           28550036-28550237,28550595-28550676,28550972-28551011,
           28551342-28551416,28551448-28551543,28551710-28551805,
           28551897-28551974,28552064-28552170,28552450-28552477,
           28552777-28552898,28554106-28554172,28554336-28554508,
           28554763-28554846,28555616-28555733,28556093-28556164,
           28557026-28557118,28557484-28557636,28558000-28558086,
           28559436-28559528,28560416-28560643,28561106-28561207,
           28561390-28561596,28561798-28561846,28562385-28562537,
           28562649-28562712,28562905-28563175,28564008-28564072,
           28564184-28564337
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 13  FEEIRRSLFYIRNWLQSGCR 72
           F+++RR+  YI +W   G R
Sbjct: 778 FDDVRRTALYIHHWKSKGTR 797


>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 64  GCRRFRTHFWLARR 105
           G RR RTH W A+R
Sbjct: 103 GARRLRTHLWHAKR 116


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20  KSEEVSSTSEIGYNPAAVAFVPISGWHGDN 109
           KS+  +     GY  +AVA+VPIS    +N
Sbjct: 398 KSQLGAFLRSCGYKDSAVAWVPISAMENEN 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,276
Number of Sequences: 37544
Number of extensions: 29132
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)