Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C20
         (111 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    40   2e-04
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    40   2e-04
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    40   2e-04
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +2

Query: 23  SEEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           + EVS    +IGYNP AV FVPISG++GDN
Sbjct: 137 TNEVSGFIKKIGYNPKAVPFVPISGFNGDN 166


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +2

Query: 23  SEEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           + EVS    +IGYNP AV FVPISG++GDN
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDN 200


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +2

Query: 23  SEEVSS-TSEIGYNPAAVAFVPISGWHGDN 109
           + EVS    +IGYNP AV FVPISG++GDN
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDN 200


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -1

Query: 105 SPCQPEMGTKATAAGL*PISDVEE-----TSSDFLKSRL 4
           S C  +M TK  AAGL P SD  E     T + F + RL
Sbjct: 72  SKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRL 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,938
Number of Sequences: 27780
Number of extensions: 23816
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)