Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C20
         (111 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    53   3e-10
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    53   3e-10
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    53   3e-10
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    49   6e-09
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   1.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   2.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   2.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          19   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          19   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          19   7.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   7.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    18   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    18   9.8  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 53.2 bits (122), Expect = 3e-10
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +2

Query: 20  KSEEVSSTSEIGYNPAAVAFVPISGWHGDN 109
           K E  S   +IGYNPAAVAFVPISGWHGDN
Sbjct: 98  KKEVSSYIKKIGYNPAAVAFVPISGWHGDN 127



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   SESRFEEIRRSL 36
           SE+RFEEI++ +
Sbjct: 90  SETRFEEIKKEV 101


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 53.2 bits (122), Expect = 3e-10
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +2

Query: 20  KSEEVSSTSEIGYNPAAVAFVPISGWHGDN 109
           K E  S   +IGYNPAAVAFVPISGWHGDN
Sbjct: 114 KKEVSSYIKKIGYNPAAVAFVPISGWHGDN 143



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   SESRFEEIRRSL 36
           SE+RFEEI++ +
Sbjct: 106 SETRFEEIKKEV 117


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 53.2 bits (122), Expect = 3e-10
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +2

Query: 20  KSEEVSSTSEIGYNPAAVAFVPISGWHGDN 109
           K E  S   +IGYNPAAVAFVPISGWHGDN
Sbjct: 171 KKEVSSYIKKIGYNPAAVAFVPISGWHGDN 200



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   SESRFEEIRRSL 36
           SE+RFEEI++ +
Sbjct: 163 SETRFEEIKKEV 174


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 48.8 bits (111), Expect = 6e-09
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 20  KSEEVSSTSEIGYNPAAVAFVPISGWHGDN 109
           K E  S   +IGYN A+VAFVPISGWHGDN
Sbjct: 171 KKEVSSYIKKIGYNTASVAFVPISGWHGDN 200



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   SESRFEEIRRSL 36
           SE+RFEEI++ +
Sbjct: 163 SEARFEEIKKEV 174


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 10   RFEEIRR--SLFYIRNWLQSGCRR 75
            R  EI+R   L Y + WL  GCR+
Sbjct: 987  RLAEIKRRPDLEYGKVWLFFGCRQ 1010


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 10  RFEEIRRSLFYIRNWL 57
           RFEE+      ++NW+
Sbjct: 60  RFEEVSEKYGILQNWM 75


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 45  QKLVTIRLPSLSYPFL 92
           Q++ + R+P LSY F+
Sbjct: 57  QRVHSSRIPDLSYDFI 72


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 91  RNGYESDGSR 62
           RN Y +DG R
Sbjct: 242 RNSYRNDGER 251


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 8   LDLRKSEEVSST 43
           LDL K E +SST
Sbjct: 308 LDLEKYEGISST 319


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 80  VPISGWHG 103
           +PI  WHG
Sbjct: 81  LPIEPWHG 88


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 80  VPISGWHG 103
           +PI  WHG
Sbjct: 81  LPIEPWHG 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,210
Number of Sequences: 438
Number of extensions: 244
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)