Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C19
(176 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 57 3e-10
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 39 8e-05
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 1.8
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 1.8
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 24 3.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 4.1
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 23 4.1
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 23 4.1
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 23 4.1
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 23 5.4
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 23 7.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 23 7.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 7.1
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc... 22 9.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 22 9.4
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 22 9.4
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 22 9.4
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 57.2 bits (132), Expect = 3e-10
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MP+Y CDYC +LTHDS SVRK H GR H NV+ Y
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDY 37
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 39.1 bits (87), Expect = 8e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 169
+PKYYC YC ++ D+P R++H KH+D +K
Sbjct: 8 IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 89 CDTYLTHDSPSVRKTHCTGRKH 154
CD L H+ P + K++ T R H
Sbjct: 89 CDQCLKHNIPCIYKSNSTKRSH 110
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 152 VFYLYSEFS*HLASHEL 102
VF LYS FS H SH L
Sbjct: 67 VFNLYSRFSVHTLSHNL 83
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
+ C C T TH + + TH G+KH+ N+
Sbjct: 54 FECRLCLT--THANENSYLTHTQGKKHQTNL 82
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -1
Query: 122 HLASHELNMCHNNHNNISAFLLYNSLTDH 36
HL + E +C H N +++L + H
Sbjct: 50 HLGTFECRLCLTTHANENSYLTHTQGKKH 78
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 26 VVCCDLLGNCIVKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDN 163
++ C G C+ + C CD Y ++ V +H +GR +++
Sbjct: 826 LLVCFKCGTCVHER----CYVCDDYAENEQMLVSASHLSGRTTRNS 867
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 23.4 bits (48), Expect = 4.1
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 11 RHEASVVCCDLL 46
RH A+ +CCD++
Sbjct: 225 RHTATTICCDIM 236
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 11 RHEASVVCCDLLGNCIVKMPK 73
R + S CD + NC+ K PK
Sbjct: 224 RSKFSRAFCDFVSNCLKKNPK 244
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 173 KISHCLYVFYLYS 135
K+ HC+Y+FY S
Sbjct: 127 KLGHCVYLFYCIS 139
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 163 IVFMFSTCTVSFPDTWRVMS*ICVTIITIIFRH 65
I+F +TCT+ F ++ + +T++ II RH
Sbjct: 466 IIFSIATCTMMFGLETGIIFGLSITVMQII-RH 497
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 137
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 14 HEASVVCCDLLGNCIVKMPKYYCDYCDT 97
+E + +C + I++ PK C +C+T
Sbjct: 4 YEGNCLCKAIHLKAIIEEPKLSCCHCET 31
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 22.6 bits (46), Expect = 7.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 176 SKISHCLYVFYLYSEFS*HLASHELNMCHNNHNNIS 69
SKIS L FY S A+ M + +HNNIS
Sbjct: 738 SKISLSLNRFYNQGGLSKSCATLPSQMYNLDHNNIS 773
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 26 VVCCDLLGNCIVKM 67
VVC +LL CI+K+
Sbjct: 1322 VVCVELLSTCILKI 1335
>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 72 FGIFTIQFPNRSQQTTLASCRXF 4
FG+ ++ +R +Q +A+C+ F
Sbjct: 106 FGLSPREYVSRLEQAIIATCKSF 128
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRK 130
Y+CD+C ++ D S R+
Sbjct: 205 YHCDHCGFQISDDQDSGRE 223
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 121 TWRVMS*ICVTIITIIFRHFYYTI 50
TWR+ I V +I I F Y+T+
Sbjct: 241 TWRIGFLIQVPLIAIAFLCVYFTL 264
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 11 RHEASVVCCDLLGNCIVKMPKY 76
+H V CC L GN P++
Sbjct: 301 KHVGKVFCCSLPGNNASGTPRF 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,690
Number of Sequences: 5004
Number of extensions: 11693
Number of successful extensions: 35
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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