Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C19
(176 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 85 4e-17
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 85 4e-17
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 85 4e-17
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 85 4e-17
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 81 5e-16
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 79 3e-15
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 38 0.006
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 38 0.006
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 38 0.006
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 38 0.006
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 30 1.5
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 30 1.5
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 30 1.5
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 30 1.5
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 29 3.6
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 29 3.6
BC092423-1|AAH92423.1| 471|Homo sapiens zinc finger protein 533... 28 4.7
BC038422-1|AAH38422.1| 369|Homo sapiens ZNF533 protein protein. 28 4.7
AK131432-1|BAD18578.1| 421|Homo sapiens protein ( Homo sapiens ... 28 4.7
AK096822-1|BAC04870.1| 395|Homo sapiens protein ( Homo sapiens ... 28 4.7
AK057999-1|BAB71629.1| 369|Homo sapiens protein ( Homo sapiens ... 28 4.7
AC068042-1|AAY24322.1| 339|Homo sapiens unknown protein. 28 4.7
AB051516-1|BAB21820.1| 1020|Homo sapiens KIAA1729 protein protein. 27 8.2
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 85.0 bits (201), Expect = 4e-17
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK Y
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 85.0 bits (201), Expect = 4e-17
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK Y
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 85.0 bits (201), Expect = 4e-17
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK Y
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 85.0 bits (201), Expect = 4e-17
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK Y
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 81.4 bits (192), Expect = 5e-16
Identities = 31/37 (83%), Positives = 35/37 (94%)
Frame = +2
Query: 65 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKH++N K Y
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDY 37
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 79.0 bits (186), Expect = 3e-15
Identities = 30/35 (85%), Positives = 34/35 (97%)
Frame = +2
Query: 71 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
++YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK Y
Sbjct: 24 RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 58
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 68 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 68 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 68 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 68 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 71 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 154
+Y+CDYCD D+ RK H G +H
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQH 30
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 71 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 154
+Y+CDYCD D+ RK H G +H
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQH 30
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 71 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 154
+Y+CDYCD D+ RK H G +H
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQH 30
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 71 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 154
+Y+CDYCD D+ RK H G +H
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQH 30
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 77 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
+C C L +S + +H G KH NV FY
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFY 87
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 77 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFY 175
+C C L +S + +H G KH NV FY
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFY 87
>BC092423-1|AAH92423.1| 471|Homo sapiens zinc finger protein 533
protein.
Length = 471
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 348 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 376
>BC038422-1|AAH38422.1| 369|Homo sapiens ZNF533 protein protein.
Length = 369
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 246 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 274
>AK131432-1|BAD18578.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ16557 fis, clone SYNOV2021953, moderately
similar to Mus musculus zinc finger protein 385
(Zfp385). ).
Length = 421
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 363 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 391
>AK096822-1|BAC04870.1| 395|Homo sapiens protein ( Homo sapiens
cDNA FLJ39503 fis, clone PROST2017128, moderately
similar to Hematopoietic zinc finger. ).
Length = 395
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 272 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 300
>AK057999-1|BAB71629.1| 369|Homo sapiens protein ( Homo sapiens
cDNA FLJ25270 fis, clone STM05566. ).
Length = 369
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 246 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 274
>AC068042-1|AAY24322.1| 339|Homo sapiens unknown protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 74 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 166
++C+ CD ++ +S K H + R+HKD V
Sbjct: 216 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 244
>AB051516-1|BAB21820.1| 1020|Homo sapiens KIAA1729 protein protein.
Length = 1020
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 167 SHCLYVFYLYSEFS*HLASH 108
SHC Y+ Y EF HL H
Sbjct: 111 SHCSYISYTKGEFQRHLVKH 130
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,656,991
Number of Sequences: 237096
Number of extensions: 407339
Number of successful extensions: 4789
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4789
length of database: 76,859,062
effective HSP length: 38
effective length of database: 67,849,414
effective search space used: 1356988280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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