Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C18
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   0.26 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   3.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    23   4.2  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    23   5.5  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    23   5.5  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    23   7.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    23   7.3  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    23   7.3  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    22   9.6  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    22   9.6  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 AQGRQPPPNRPSCDPFTFSNDGYMTFN 127
           A   Q P N P C  F +S DG M  N
Sbjct: 354 ANFEQIPVNSPKCPVFNYSRDGPMNVN 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  KQPQLWLTGDFLHHFIKIKNQSQMLS 115
           + P L L G F   ++   N SQMLS
Sbjct: 183 RSPLLDLMGSFERDYVNFSNFSQMLS 208


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 210 PAQGRQPPPNRPSCDPFTFSND 145
           P     P P+ PS  P +FSND
Sbjct: 88  PPSMNYPTPSTPSVLPESFSND 109


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 6   RPRPAASAATGSSLSY 53
           RP P ++ AT  SLSY
Sbjct: 319 RPTPKSATATADSLSY 334


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 130 ESHIPVVREREGITRRSVGRRLPPL 204
           E H P++RER      SV    PP+
Sbjct: 141 EEHRPILRERTSRINYSVPLAFPPV 165


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 115 DAARVESHIPVVREREGITRRSVGRRLPPLR 207
           D+  + S+ P VRE   + + + G R P +R
Sbjct: 254 DSRSLSSYAPTVREPVPVPKSNSGFRFPFMR 284


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 VDAARVESHIPVVREREGITRRSVGRRL 195
           V  A +ES  P +R+R+G+T  SV + L
Sbjct: 824 VKCAMLES-FPNIRDRKGVTPSSVKKLL 850


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 162 FTFSNDGYMTFNSG 121
           + FSND Y TF  G
Sbjct: 265 YKFSNDSYFTFYEG 278


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  LGSYGKQPQLWLTGDFLHHFIK 88
           +G YG   +  +TG+ LH F +
Sbjct: 461 VGIYGPPTKAMVTGNILHDFFQ 482


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 5   EAQASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQMLSTPPEL 130
           E   + L  YG Q    L+  F HHF+    +  +LS   E+
Sbjct: 173 ECLVNVLVHYGIQRPKELSSCFCHHFLNPPTRIPILSVMVEV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 810,854
Number of Sequences: 5004
Number of extensions: 12585
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)