Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C18
(211 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 29 0.51
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 28 0.90
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 28 1.2
05_03_0114 + 8539808-8539828,8540327-8541748 28 1.2
04_03_0162 + 12117799-12117872,12118714-12118747,12118839-121189... 27 1.6
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 27 1.6
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 26 4.8
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 26 4.8
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 25 6.3
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 25 6.3
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 25 6.3
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 25 6.3
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409... 25 6.3
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 25 6.3
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 25 6.3
10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935 25 8.4
07_03_0698 - 20765305-20768526 25 8.4
04_01_0528 - 6917414-6919849 25 8.4
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 29.1 bits (62), Expect = 0.51
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 62 GDFLHHFIKIKNQSQMLSTPPELKVIYPSLENVKGSHDGLLGGGCRPC 205
G H +N S +STPP V++P N++G LGG R C
Sbjct: 462 GKHNHEVPASRNASHEMSTPPMKPVVHPINSNMQG-----LGGMMRAC 504
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 74 HHFIKIKNQSQMLSTPPELKVIYPSLENVKGSHDGLLGG 190
HH+ +M + P +KV SL+NVKG D + G
Sbjct: 66 HHWDHAGGNEKMAQSVPGIKVYGGSLDNVKGCTDQVENG 104
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 122 PELKVIYPSLENVKGSHDGLLGGGCR 199
P+ K+ +P L+ + G G G GCR
Sbjct: 208 PQSKIEFPDLDGLGGGGGGASGSGCR 233
>05_03_0114 + 8539808-8539828,8540327-8541748
Length = 480
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 LGSYGKQPQLWLTGDF-LHHFIKIKNQSQMLS-TPP 124
LGS ++P W +GD+ +HH + + QS + + TPP
Sbjct: 238 LGSEDEEPMRWPSGDWEVHHLLHLYYQSFIPNRTPP 273
>04_03_0162 +
12117799-12117872,12118714-12118747,12118839-12118920,
12119266-12119453
Length = 125
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 68 FLHHFIKIKNQSQMLSTPPELKVIYP 145
F+HH + + +Q+ S+ P K+I+P
Sbjct: 61 FIHHALVLSSQADAFSSSPPGKIIFP 86
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = +2
Query: 98 QSQMLSTPP------ELKVIYPSLENVKGSHDG 178
QS STPP EL V+Y + V SHDG
Sbjct: 540 QSSFFSTPPLPCHLSELPVVYKEEDEVAASHDG 572
>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 88 NQEPVADAVD-AARVESHIPVVREREGITRRSVGRRLPP 201
++ VA AV A + H+ V GI R GRR PP
Sbjct: 1130 DEAQVAAAVGLAVKRHGHLDVFHNNAGIAGRLPGRRSPP 1168
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 130 QLGRRRQHLRLVLDFNEMMQEIAGQP*L-RLLPVAAEAAGLG 8
QLGR R LV + +Q AG+ + R+ V AEA G G
Sbjct: 242 QLGRNRVERMLVPQPRQQLQRTAGEVLVHRVAGVGAEADGAG 283
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 83 IKIKNQSQMLSTPPELKVIYPSLENVKGSHDGLLGGGCRP 202
+ + + Q+L P VIY +++N KGS L RP
Sbjct: 459 LAVPHFEQLLQHPFANYVIYSAIQNSKGSLHSALTNAIRP 498
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 101 SQMLSTPPELKVIYPSLENVKGSHDGLLG 187
+++L+TPP L V P+L V G G+ G
Sbjct: 134 NRVLATPPPLPVDDPNLPAVMGGGGGIPG 162
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 134 VIYPSLENVKGSHDGLLGGGCRP 202
+++P++E+V+ S +G G C P
Sbjct: 543 IVWPTVEDVRTSIEGYAAGSCIP 565
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 62 GDFLHHFIKIKNQSQMLSTPPELKVIYPSLENVKG 166
G FLH KN Q E K YPS ++ G
Sbjct: 604 GAFLHPTHVFKNFEQFSGATYECKAAYPSFDDSSG 638
>05_07_0311 -
29139883-29140359,29140641-29140788,29140883-29140959,
29141227-29141387,29141785-29142803,29142905-29142996,
29143117-29143256,29143397-29143574
Length = 763
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 65 DFLHHFIKIKNQSQMLSTPPELKVIYPSLENV-KGSHDGLLGGGCRP 202
+F H + + + STPP + P + ++ KGS L G RP
Sbjct: 259 NFQHSDVNVSDSESEASTPPAASSLQPWMADILKGSASSRLAGN-RP 304
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 61 RRFLASFH*NQEPVADAVDAARVESHIPVVRERE 162
R FL FH QE V + + + H+PV + +
Sbjct: 150 REFLEEFHEKQEQVKEWLQNLGIGEHMPVGHDED 183
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQMLSTPPELKVIYPSLENV 160
QAS +Y K ++ ++ +I+ + LST ++P++EN+
Sbjct: 43 QASRYAAYQKMSDHMMSNEYAIRYIRHVFTKEQLSTRVGCGRVHPTIENI 92
>10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935
Length = 130
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQMLSTPPELKVIYPSLEN 157
QASS +Y K ++ ++ +I+ + + LST ++P +EN
Sbjct: 46 QASSSVAYQKMSDHMISNEYAARYIRHISTQEQLSTRVGCGRVHPIIEN 94
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 7 GPGQQPRQLREAASVMADRRFLASFH*NQEPVADAVDAARVESHIPVV--REREGITRRS 180
G +QP L+ + ++ S +Q+P+ D + HI VV ++G+ +
Sbjct: 319 GDKEQPPPLQSGGGIKQQQQLPQSDGDDQQPLLPQSDGGNKQQHIRVVIISVQDGMDEAA 378
Query: 181 VGRRL 195
VG +
Sbjct: 379 VGETM 383
>04_01_0528 - 6917414-6919849
Length = 811
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 162 FTFSNDGYMTFNSGGVDSICDWF 94
FT +N + S GVDS+ D+F
Sbjct: 233 FTLTNGSQINITSAGVDSMGDFF 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,514,602
Number of Sequences: 37544
Number of extensions: 112442
Number of successful extensions: 434
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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