Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C18
(211 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ367843-1|ABC79301.1| 608|Homo sapiens tyrosyl-DNA phosphodies... 42 3e-04
BC107877-1|AAI07878.1| 589|Homo sapiens TDP1 protein protein. 42 3e-04
BC015474-1|AAH15474.1| 608|Homo sapiens tyrosyl-DNA phosphodies... 42 3e-04
AK001952-1|BAA91997.1| 608|Homo sapiens protein ( Homo sapiens ... 42 3e-04
AF182003-1|AAF65624.1| 189|Homo sapiens tyrosyl-DNA phosphodies... 29 2.7
BC114956-1|AAI14957.1| 373|Homo sapiens C12orf35 protein protein. 28 6.3
BC114509-1|AAI14510.1| 373|Homo sapiens C12orf35 protein protein. 28 6.3
BC098115-1|AAH98115.1| 373|Homo sapiens C12orf35 protein protein. 28 6.3
AK001514-1|BAA91734.1| 363|Homo sapiens protein ( Homo sapiens ... 28 6.3
>DQ367843-1|ABC79301.1| 608|Homo sapiens tyrosyl-DNA
phosphodiesterase 1 protein.
Length = 608
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQM--LSTPPELKVIYPSLENVKGSHDGLL 184
Q SS+GS G WL +F + + +S+ S+ P L +IYPS+ENV+ S +G
Sbjct: 397 QFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP-LYLIYPSVENVRTSLEGYP 455
Query: 185 GGGCRP 202
GG P
Sbjct: 456 AGGSLP 461
>BC107877-1|AAI07878.1| 589|Homo sapiens TDP1 protein protein.
Length = 589
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQM--LSTPPELKVIYPSLENVKGSHDGLL 184
Q SS+GS G WL +F + + +S+ S+ P L +IYPS+ENV+ S +G
Sbjct: 397 QFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP-LYLIYPSVENVRTSLEGYP 455
Query: 185 GGGCRP 202
GG P
Sbjct: 456 AGGSLP 461
>BC015474-1|AAH15474.1| 608|Homo sapiens tyrosyl-DNA
phosphodiesterase 1 protein.
Length = 608
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQM--LSTPPELKVIYPSLENVKGSHDGLL 184
Q SS+GS G WL +F + + +S+ S+ P L +IYPS+ENV+ S +G
Sbjct: 397 QFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP-LYLIYPSVENVRTSLEGYP 455
Query: 185 GGGCRP 202
GG P
Sbjct: 456 AGGSLP 461
>AK001952-1|BAA91997.1| 608|Homo sapiens protein ( Homo sapiens
cDNA FLJ11090 fis, clone PLACE1005308. ).
Length = 608
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 QASSLGSYGKQPQLWLTGDFLHHFIKIKNQSQM--LSTPPELKVIYPSLENVKGSHDGLL 184
Q SS+GS G WL +F + + +S+ S+ P L +IYPS+ENV+ S +G
Sbjct: 397 QFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVP-LYLIYPSVENVRTSLEGYP 455
Query: 185 GGGCRP 202
GG P
Sbjct: 456 AGGSLP 461
>AF182003-1|AAF65624.1| 189|Homo sapiens tyrosyl-DNA
phosphodiesterase protein protein.
Length = 189
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 128 LKVIYPSLENVKGSHDGLLGGGCRP 202
L +IYPS+ENV+ S +G GG P
Sbjct: 18 LYLIYPSVENVRTSLEGYPAGGSLP 42
>BC114956-1|AAI14957.1| 373|Homo sapiens C12orf35 protein protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 35 GKQP-QLWLTGDFLHHFIKIKNQSQMLSTPPELK 133
GKQP ++W+ L I N++Q PP++K
Sbjct: 168 GKQPDKIWIDKTKLDKLTNISNEAQFSQMPPQVK 201
>BC114509-1|AAI14510.1| 373|Homo sapiens C12orf35 protein protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 35 GKQP-QLWLTGDFLHHFIKIKNQSQMLSTPPELK 133
GKQP ++W+ L I N++Q PP++K
Sbjct: 168 GKQPDKIWIDKTKLDKLTNISNEAQFSQMPPQVK 201
>BC098115-1|AAH98115.1| 373|Homo sapiens C12orf35 protein protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 35 GKQP-QLWLTGDFLHHFIKIKNQSQMLSTPPELK 133
GKQP ++W+ L I N++Q PP++K
Sbjct: 168 GKQPDKIWIDKTKLDKLTNISNEAQFSQMPPQVK 201
>AK001514-1|BAA91734.1| 363|Homo sapiens protein ( Homo sapiens
cDNA FLJ10652 fis, clone NT2RP2005886. ).
Length = 363
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 35 GKQP-QLWLTGDFLHHFIKIKNQSQMLSTPPELK 133
GKQP ++W+ L I N++Q PP++K
Sbjct: 158 GKQPDKIWIDKTKLDKLTNISNEAQFSQMPPQVK 191
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,272,427
Number of Sequences: 237096
Number of extensions: 547859
Number of successful extensions: 1795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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