Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C18
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   0.30 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    20   2.8  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    20   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   8.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   8.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.30
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 41  QPQLWLTGDFLHHFIKIKNQSQMLST 118
           QP   + G  LHH I +  ++Q+L+T
Sbjct: 29  QPLAVVFGLSLHHIIDVDEKNQILTT 54


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 210 PAQGRQPPPNRPSCDPF 160
           P  GR+P P  P   PF
Sbjct: 27  PQPGRRPFPTFPGQGPF 43


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 210 PAQGRQPPPNRPSCDPF 160
           P  GR+P P  P   PF
Sbjct: 13  PQPGRRPFPTFPGQGPF 29


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 74  HHFIKIKNQSQMLSTPPELK 133
           H  IK+KNQ+     P  L+
Sbjct: 778 HFEIKLKNQTARRGEPAVLQ 797


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 200 GGNRLPTDRRVIPSRSLT 147
           G N L T  + +P+R LT
Sbjct: 59  GANALFTPGQELPARGLT 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 ELKVIYPSLENVKGSHDGLLGGGCRPCA 208
           E  ++   L ++KG  +GL+ G    C+
Sbjct: 301 EAIIVQAELMDLKGDLEGLVEGVIIDCS 328


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 1   ARGPGQQPRQLREAASVMADRRFLASFH 84
           A+   Q P  LRE    + D R L + H
Sbjct: 375 AQNHPQHPDILRELLKKIPDLRTLNTLH 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,465
Number of Sequences: 438
Number of extensions: 835
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)