Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C15
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    33   0.024
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    31   0.096
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   0.90 
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    27   1.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   2.7  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   3.6  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   3.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   4.8  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   6.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    24   8.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   8.4  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   8.4  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 32.7 bits (71), Expect = 0.024
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 297 TQAESSPQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQQQ 413
           +++  +P   R YKC LC K +  L    +H+ TH  ++
Sbjct: 14  SRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEK 52


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 30.7 bits (66), Expect = 0.096
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 315 PQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQQQ 413
           PQ+ ++Y C  C + +  L  L++H+ +H  ++
Sbjct: 64  PQKVKQYVCETCTRAFARLEHLKRHIRSHTNEK 96


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 327 RRYKCGLCVKTYMYLHSLRKHMLTH 401
           R Y+C LC   ++  H L++H+  H
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLRIH 495



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   RGYQCQVCGKGYIESSSYKKHMK 72
           R Y+C +C  G++     K+H++
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLR 493


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 283 RCRFKPRRRAPPNSSAATSADCASRLTCTCTV 378
           + + KP+RRAPP  +  T   C    + +C++
Sbjct: 7   KAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSL 38


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 297 TQAESSPQQQRRYKCGL--CVKTYMYLHSLRKHMLTH 401
           ++A+S  + Q  Y C    C K +   ++L+ HM TH
Sbjct: 558 SKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTH 594



 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 327 RRYKCGLCVKTYMYLHSLRKHMLTH 401
           R ++C +C K++   H  R+H   H
Sbjct: 598 RPFQCSICKKSFARQHDKRRHEQLH 622


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 321 QQRRYKCGLCVKTYMYLHSLRKHML-THVQ 407
           + + Y+C +C K Y  L+ L+ H   +H+Q
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYHRTHSHLQ 424


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 88  Y*TRAFSCVSYTNSTLCNLSRKPGTGTL 5
           Y  R F+   YT+S +CNLS + G  +L
Sbjct: 79  YSLRVFAKDVYTDSPICNLSARRGLYSL 106


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 1   ARGYQ-CQVCGKGYIESSSYKKHM 69
           A  YQ C+VC K +    +Y  HM
Sbjct: 66  AEFYQNCEVCNKKFYSEGAYSSHM 89


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 135 NLRTA*DRVSH*TATQFTDFGRTARATKINVGGAF 239
           +LR A DRV   TATQ   + RTAR    N+   F
Sbjct: 102 DLRYAFDRVFDETATQQQVYERTARPLLDNILDGF 136


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 ECLTEPQPSLPTLDEQPEQ 213
           +C  E  P+L T DEQP++
Sbjct: 113 DCFDELFPTLSTTDEQPKE 131


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 225 VGGAFPVVXXRAQGDLRPNALQVQTQAESS 314
           +  +F V   + +GDL  NA+   +QAE S
Sbjct: 77  IDNSFNVFAKKNEGDLLQNAIYELSQAEGS 106


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 143 YRMRQSVSLNRNPVYRLWTNSPSNKDQCGWGFP 241
           YR+ +S++L   PV  ++T+       CGW  P
Sbjct: 25  YRLVKSLALIVLPVLPVYTSKVLRCSHCGWYEP 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,950
Number of Sequences: 5004
Number of extensions: 28992
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)