Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C15
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 0.28
07_03_1095 + 23926977-23927657 30 0.87
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 30 0.87
05_05_0006 + 21450739-21451434 29 1.1
08_02_1602 - 28148255-28149413,28151927-28152087 29 1.5
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 29 1.5
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 29 1.5
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 1.5
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729... 29 2.0
09_06_0299 - 22119427-22119477,22119823-22120193,22120503-22120914 28 2.7
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 2.7
08_02_1327 - 26165045-26165116,26165368-26165375,26166696-26167056 28 3.5
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 28 3.5
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 27 4.6
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 27 6.1
05_02_0072 - 6334613-6335215 27 6.1
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 27 6.1
02_05_0202 + 26708049-26709074 27 6.1
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 27 8.1
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 27 8.1
09_02_0366 + 7941550-7942161,7942230-7942775 27 8.1
03_06_0319 + 33107668-33107913 27 8.1
02_01_0082 - 564946-565075,565164-565384,565662-565916 27 8.1
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 31.5 bits (68), Expect = 0.28
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 312 SPQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQQQQ 416
SP +R+Y+C C KT+ +L H+ H +Q++
Sbjct: 456 SPASKRKYECSECHKTFSTHQALGGHVAAHKRQKK 490
>07_03_1095 + 23926977-23927657
Length = 226
Score = 29.9 bits (64), Expect = 0.87
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 255 RAQGDLRPNALQVQTQAESSPQQQRRYKCGLCVKTYMYLHSLRKHMLTH 401
R GD++ + V T P Q R Y+C +C K Y +L HM H
Sbjct: 74 RGMGDVK--GVGVDTLELVKPSQ-RAYECSVCGKVYWCYQALGGHMTCH 119
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 29.9 bits (64), Expect = 0.87
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 107 RTLKLARRLKPPYRMRQSVSLNRNP 181
R L++ RRL PPYR + +L R P
Sbjct: 151 RVLQMRRRLSPPYRACTAAALRRRP 175
>05_05_0006 + 21450739-21451434
Length = 231
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 295 KPRRRAPPNSSAATSADCASRLTCTCT 375
+P+ APP+SSA+T+ A+ T T T
Sbjct: 62 RPKSSAPPSSSASTTTTAAAAFTSTST 88
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 29.1 bits (62), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
+ CQVCGKG+ ++ + HM+
Sbjct: 258 HYCQVCGKGFKRDANLRMHMR 278
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 240 PVVXXRAQGDLRPNALQVQTQAESSPQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQQQQQ 419
P + R Q + LQ+Q Q +PQ Q + + + K + ++ M +QQQQQ
Sbjct: 825 PQLLTRLQHQYLLSQLQLQPQLPVTPQPQPQPQLSMLDKMMLLKQQQQQQMQQQMQQQQQ 884
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 29.1 bits (62), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
+ CQVCGKG+ ++ + HM+
Sbjct: 322 HYCQVCGKGFKRDANLRMHMR 342
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C KGY S YK H+K
Sbjct: 129 RQWVCARCAKGYAVQSDYKAHLK 151
>06_03_1229 +
28571131-28571235,28572108-28572656,28572749-28572918,
28573454-28573669,28573787-28573946
Length = 399
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/78 (24%), Positives = 27/78 (34%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMKXXXXXXXXXXXXXXXXXXXXQTSVPHETECLTEPQPSLP 189
Y C +CGK Y S ++ +H+ T V E + PS
Sbjct: 67 YSCALCGKEYRSSKAHAQHLNSRSHLMKASQEPNASIAGI--TIVKPRPERVQRRAPSAV 124
Query: 190 TLDEQPEQQRSMWVGLSP 243
DE E + WV + P
Sbjct: 125 EEDED-EDEEEEWVEVDP 141
>09_06_0299 - 22119427-22119477,22119823-22120193,22120503-22120914
Length = 277
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 172 PQPSLPTLDEQPEQQRSMWVGLSPW 246
PQP +P DE E + SMW W
Sbjct: 6 PQPHVPFTDEDLESEESMWSLYQRW 30
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 277 PMRCRFKPRRRAPPNSSAATSADCASRLTCTCTVLGNI 390
P+ FK PP+ +A T+ C+ C C++ G+I
Sbjct: 1745 PLSFFFKDGVLIPPDITAPTTLHCSYMRLCVCSIPGSI 1782
>08_02_1327 - 26165045-26165116,26165368-26165375,26166696-26167056
Length = 146
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -1
Query: 215 CCSGCS---SKVGKLGCGSVRHSVS 150
C GCS S VGK+G G +R SVS
Sbjct: 70 CAGGCSDARSGVGKVGLGKIRVSVS 94
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 287 AGSNPG-GELPPTAAPLQVRTVRQDLHVPAQS*ETYVDARTAT 412
AGS+ G L AA +Q R +R+ L VP + E ++D TAT
Sbjct: 571 AGSDDGLAGLARAAAAIQ-RAIREGLEVPFGNSERWLDGATAT 612
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 233 GFPRGTXQSSR*PETQCVAGSNPGGELPPTAAPLQV 340
G+P G P+T GS P G +PP + P+Q+
Sbjct: 122 GYP-GAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQM 156
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C K Y S YK H+K
Sbjct: 141 RQWACSRCSKAYAVHSDYKAHLK 163
>05_02_0072 - 6334613-6335215
Length = 200
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 301 RRRAPPNSSAATSADCASRLTCT 369
RR+APP SAA+S +R T T
Sbjct: 134 RRKAPPAPSAASSTSAPTRSTAT 156
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 269 PETQCVAGSNPGGELPPTAAPLQVRTVRQDLHVPA 373
PE+ VA S+P PP +PL+ +R L A
Sbjct: 31 PESVSVAASSPAQAAPPAGSPLRPFALRAHLREEA 65
>02_05_0202 + 26708049-26709074
Length = 341
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 315 PQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQ 407
P+++ R++C C K + +L H +HV+
Sbjct: 192 PEKRTRFQCPACKKVFRSYQALGGHRASHVR 222
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
++C+ CGK Y S +K H+K
Sbjct: 124 WRCERCGKRYAVHSDWKAHVK 144
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C K Y S YK H+K
Sbjct: 142 RQWACARCSKAYAVHSDYKAHLK 164
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +3
Query: 234 AFPVVXXRAQGDLRPNALQVQTQAESSPQQQRRYKCGLCVKTYMYLHSLRKHMLTHVQQQ 413
A V A G P+ + + AE + + C +C KT+ ++++ HM H Q
Sbjct: 156 ASSAVATAAGGGQAPSQYWIPSAAEILVGSTQ-FSCAVCNKTFNRFNNMQMHMWGHGSQY 214
Query: 414 QQ 419
++
Sbjct: 215 RK 216
>03_06_0319 + 33107668-33107913
Length = 81
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 233 GFPRGTXQSSR*PETQCVAGSNPGGELPPT 322
G GT SS+ + C G+N GG+ PPT
Sbjct: 49 GTGTGTNASSQ--PSNCTYGNNVGGQCPPT 76
>02_01_0082 - 564946-565075,565164-565384,565662-565916
Length = 201
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 195 GRTARATKINVGGAFPVVXXRAQGDLR 275
G R +N+GG PVV A+G R
Sbjct: 13 GGGGRRASMNIGGGSPVVAAEAEGQRR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,146
Number of Sequences: 37544
Number of extensions: 220160
Number of successful extensions: 857
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -