Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C14
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    33   0.019
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    33   0.025
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    28   0.94 

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 420 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRR 512
           V KA  AQ+ V KG H    RK+RTS  FRR
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRR 33


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 420 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRR 512
           V KA  AQ+ V KG H    +K+RTS  FRR
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRR 33


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 433 RALVTGFTSCFFCPLMPVFLGLGAIFNF 350
           R +V GF +C F P++ ++L +   F +
Sbjct: 414 RFIVAGFLNCLFAPIVAIYLVIHNFFRY 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,070,058
Number of Sequences: 5004
Number of extensions: 13293
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)