Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C14
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282...    31   0.41 
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    27   6.7  
02_04_0658 - 24793219-24794109                                         27   8.8  
02_02_0651 - 12649275-12649373,12649418-12650479                       27   8.8  

>06_02_0208 -
           13026296-13026654,13027394-13027497,13028109-13028200,
           13028418-13028774,13029932-13030109,13030454-13030507,
           13030701-13030784,13031521-13031714
          Length = 473

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = +2

Query: 32  EIRVGPVETRRKKNYNC*NXXXXXXGCVDICXXXXXXXXXXXXXXXCFN*GCTCFGTSC* 211
           EI+  P  T+RKK+ NC N       C  I                CF  G  C G  C 
Sbjct: 70  EIKSTP-STKRKKHCNCKNSQCLKLACSSILDLFTGQIDQLYGYCECFAAGLYCDGCHCK 128

Query: 212 EKGN 223
           + GN
Sbjct: 129 QCGN 132


>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 426 KALKAQRKVVKGEHGNRVRKIRTSVHFRR 512
           +ALKA + V  G      +KIRTSV F R
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHR 54


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 509 SEMH*SANLTHSIAMFTFNYL-PLCFKSFSNRFHQLFFLSL 390
           S +H  A +  S+ +F F  L   C K FS R H LF  +L
Sbjct: 197 SRLHVFAIMLFSLQIFLFVPLVAFCIKKFSLRLHLLFSFAL 237


>02_02_0651 - 12649275-12649373,12649418-12650479
          Length = 386

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 511 LRKCTEVRIL--RTLLPCSPLTTFLCALRALVTGFTSC 404
           L  CT  R+L  R+L   +P TTF+  ++A++  +T C
Sbjct: 112 LNLCTGERVLLPRSLRNNNPDTTFINHIQAVILSYTPC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,065,562
Number of Sequences: 37544
Number of extensions: 89637
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)