Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C14
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    40   8e-04
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    38   0.006
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    29   2.0  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +3

Query: 426 KALKAQRKVVKGEHGNRVRKIRTSVHFRR 512
           KAL A++KVVKG+     R++RTSVHFRR
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRR 39


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +3

Query: 420 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRR 512
           V KA++A++ VVKG   N  + +RTSVHFRR
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRR 38


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 475 LLPCS--PLTTFLCALRALVTGFTSCFFCPLMPVFLGLGAIFNFVATGLGFEDLAVDAAF 302
           L+ CS  PL  +    RA      +C    L+PV  G+  I    ATGL F+ + V   F
Sbjct: 229 LMVCSLRPLMIYFRYRRAESKPLEACLGA-LIPVLSGITTIGMVSATGLAFQSIIVSTLF 287

Query: 301 L 299
           L
Sbjct: 288 L 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,151,310
Number of Sequences: 27780
Number of extensions: 85525
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)