Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C12
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          26   0.63 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   2.6  
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    24   2.6  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       24   3.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        23   5.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   7.8  

>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 136 DNRTLIESLTLVLNFYPLTCSPVWR 210
           D++T+++ L  V+  YP TC+ + R
Sbjct: 134 DSKTILDELKKVIELYPQTCAVLIR 158


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 132 SKGMGARASYKGQDQHKRVLETRLL 58
           S G+G     KGQ  HK V + RLL
Sbjct: 68  SCGVGFTCHIKGQVSHKIVTDARLL 92


>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 149 NVLLSHPRAWGQGHR 105
           NV  SHPR +G+G R
Sbjct: 5   NVWFSHPRKYGKGSR 19


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 LIESLTLVLNFYPLTCSPVWRD 213
           L +SL   +N YP TC+ + RD
Sbjct: 163 LHDSLQEAINLYPDTCAVIVRD 184


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 75  LETRLLPHVNDDDNTFLCI 19
           L T  + HV++++NTF  I
Sbjct: 80  LSTSFVAHVSENENTFFAI 98


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 PHALG*DNRTLIESLTLVLNFYPLTCSPVWR 210
           P+++   +  L+ +L   LNF PL+  P+ R
Sbjct: 614 PNSISSFSEVLLPNLISTLNFAPLSLIPLLR 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,607
Number of Sequences: 5004
Number of extensions: 17720
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)