Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C12
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268 27 1.6
03_05_0280 - 22671786-22672208 27 2.1
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926... 26 3.7
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 26 4.8
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 26 4.8
01_01_0536 - 3926450-3928447 25 6.4
07_03_0118 - 13600948-13602174 25 8.5
07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521 25 8.5
02_05_0795 - 31792231-31794780 25 8.5
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 25 8.5
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908... 25 8.5
>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
Length = 583
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 27 KMYCHHH*HAAVTGFLVLACVGLVP 101
++ CHHH HA +T L A GL P
Sbjct: 7 RVCCHHH-HAGLTLLLACATAGLPP 30
>03_05_0280 - 22671786-22672208
Length = 140
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 206 HTGEQVKG*KLRTRVKLSINVLLSHPRAWGQGHRTRD 96
H G V + TR+ L + L+ H GQGHR D
Sbjct: 55 HDGPAVIDQRNTTRLALEPSFLVDHGIGEGQGHRVHD 91
>03_02_0534 -
9267297-9267734,9268376-9268649,9268782-9268889,
9269476-9269567,9269652-9269711,9269812-9269994
Length = 384
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Frame = +3
Query: 36 CHHH*HAAVTGFLVLAC------VGLVPCTMPLPPCPWMR 137
C H AA T L L C PC PLP CP+ R
Sbjct: 265 CGHQMCAACT--LALCCHAKPSAAAATPCQQPLPTCPFCR 302
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 80 RLCWSCPLYDALAPMPLDEITE 145
R W P Y ++AP P EI E
Sbjct: 701 RTLWFLPQYSSVAPTPTQEIRE 722
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 149 NVLLSHPRAWGQGHRTRDKTNTSEY*KPGYCRMSM 45
+VLL H A QGHR K + + + K G RM M
Sbjct: 453 SVLLRHRLAVAQGHRVEQKMSLTLFMKNG-LRMEM 486
>01_01_0536 - 3926450-3928447
Length = 665
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 144 SVISSKGMGARASYKGQDQHKRVLETRLLP 55
SV+S+ G G + G HKRVLE+ +LP
Sbjct: 166 SVLSACGKG-KDLLLGMQVHKRVLESGVLP 194
>07_03_0118 - 13600948-13602174
Length = 408
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 24 IKMYCHHH*HAAVTGFLVLACVGLVPCTMPLPPCPW 131
+ + C+HH H V L G P P P PW
Sbjct: 1 MSLRCYHH-HLKVRALLCGFGGGCFPTRTPPSPSPW 35
>07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521
Length = 191
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 96 QDQHKRVLETRLLPHVNDDDNTFLCITRPSCR 1
Q+ +RV+E R P +DDD+T L +R R
Sbjct: 23 QEVARRVVEPRPRPLDDDDDSTTLVSSRQQWR 54
>02_05_0795 - 31792231-31794780
Length = 849
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = +3
Query: 39 HHH*HAAVTGFL---VLACVGLVPCTMPLPPCP 128
H H AA FL GL P + LPPCP
Sbjct: 232 HAHLVAAAHSFLSDHAYINFGLAPSVISLPPCP 264
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +1
Query: 178 FYPLTCSPVWRDLAKELMSNKS 243
F +TC+P W ++ +EL + ++
Sbjct: 532 FLTMTCNPNWEEIVRELENGQT 553
>02_02_0336 +
9081958-9082222,9082466-9082569,9082632-9082681,
9083484-9083566,9084129-9084257,9085821-9085881,
9086010-9086826
Length = 502
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 117 ARASYKGQDQHKRVLETRLLPHV 49
ARA Y ++ + +L +RLLP V
Sbjct: 269 ARAQYPKSEERREILSSRLLPLV 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,104,506
Number of Sequences: 37544
Number of extensions: 128669
Number of successful extensions: 331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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