Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C12
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 30 0.25
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF025459-4|AAB70984.2| 292|Caenorhabditis elegans Hypothetical ... 27 2.3
Z81062-14|CAB02947.2| 362|Caenorhabditis elegans Hypothetical p... 26 4.1
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical ... 25 5.4
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 25 7.1
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z72506-5|CAA96616.2| 259|Caenorhabditis elegans Hypothetical pr... 25 7.1
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 29.9 bits (64), Expect = 0.25
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 57 AVTGFLVLACVGLVPCTMPLPPCPWMR 137
A GF V +GL C P PP PW +
Sbjct: 825 AFAGFTVAWRLGLFKCLPPFPPFPWKK 851
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 121 HALG*DNRTLIESLTLVLNFYPLTCSPVWRDLAKELMSNK 240
HAL R LI + L+ F P C +W +L K + S +
Sbjct: 752 HALAALGRVLILIVRLMAPFTPFFCEYIWLNLKKVIGSTE 791
>AF025459-4|AAB70984.2| 292|Caenorhabditis elegans Hypothetical
protein H14A12.3 protein.
Length = 292
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 151 IESLTLVLNFYPLTCSPVWRDLAKELMSNKS 243
++SLT+ N+ P SP +D+ + SNK+
Sbjct: 3 VQSLTITTNYPPKPASPNPQDIRDTIRSNKT 33
>Z81062-14|CAB02947.2| 362|Caenorhabditis elegans Hypothetical
protein F15A4.3 protein.
Length = 362
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 121 HALG*DNRTLIESLTLVLNFYPLTCSPVWRD 213
HAL DN L+ +L + L L+CSP W++
Sbjct: 291 HAL--DNSMLLPALVMSLTL--LSCSPAWKE 317
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 193 CSPVWRDLAKELMSN 237
C PV+ +LAKE+M+N
Sbjct: 626 CQPVFENLAKEIMNN 640
>AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.4 protein.
Length = 360
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 148 LIESLTLVLNFYPLTCSPVWRD 213
+I S LV++ L CSP WRD
Sbjct: 295 VILSAALVISIALLFCSPSWRD 316
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 84 CVGLVPCTMPLPPCP 128
C+ +PC P+P CP
Sbjct: 653 CLPTIPCCPPIPCCP 667
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 84 CVGLVPCTMPLPPCP 128
C+ +PC P+P CP
Sbjct: 298 CLPTIPCCPPIPCCP 312
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 84 CVGLVPCTMPLPPCP 128
C+ +PC P+P CP
Sbjct: 250 CLPTIPCCPPIPCCP 264
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 84 CVGLVPCTMPLPPCP 128
C+ +PC P+P CP
Sbjct: 978 CLPTIPCCPPIPCCP 992
>Z72506-5|CAA96616.2| 259|Caenorhabditis elegans Hypothetical
protein F07A5.4 protein.
Length = 259
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 93 DQHKRVLETRLLPHVNDDDNTFLCI 19
++HKR L + LP +DD F+ I
Sbjct: 36 NRHKRELNSNRLPKTDDDSTIFMPI 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,904,222
Number of Sequences: 27780
Number of extensions: 105163
Number of successful extensions: 276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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