Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C11
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 193 8e-51
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 125 2e-30
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 117 5e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 3e-25
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 32 0.024
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 0.52
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.52
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 0.69
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.7
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 3.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 3.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 3.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 4.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 4.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 4.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 24 6.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 24 6.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 6.4
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 24 6.4
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.4
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 24 6.4
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 24 6.4
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 6.4
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 24 8.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 8.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 24 8.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 24 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 193 bits (470), Expect = 8e-51
Identities = 89/117 (76%), Positives = 102/117 (87%)
Frame = +3
Query: 15 GSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCID 194
GSGMGTLL+SKIREEYPDR+M T+SV P+PK SDTVVEPYNA LS+HQLVEN+DET+CID
Sbjct: 144 GSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCID 203
Query: 195 NEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPF 365
NEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPF
Sbjct: 204 NEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPF 260
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 125 bits (301), Expect = 2e-30
Identities = 54/117 (46%), Positives = 80/117 (68%)
Frame = +3
Query: 15 GSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCID 194
GSG+G LL+ ++ EY + +SV P+P+VS +VVEPYN+VL+ H ++N+D T+ +D
Sbjct: 150 GSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVD 209
Query: 195 NEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPF 365
NEA +DIC R L + PTY +LN L++ +S +T LRF G LN DL + N+VP+
Sbjct: 210 NEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPY 266
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 117 bits (282), Expect = 5e-28
Identities = 51/117 (43%), Positives = 77/117 (65%)
Frame = +3
Query: 15 GSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCID 194
GSG G LL+ ++ EY + +SV P+P+VS +VVEPYN+VL+ H ++ D T+ +D
Sbjct: 146 GSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVD 205
Query: 195 NEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPF 365
NE+ +DIC R L + P+Y +LN L++ +S +T LRF G LN DL + N+VP+
Sbjct: 206 NESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPY 262
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (259), Expect = 3e-25
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Frame = +3
Query: 15 GSGMGTLLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDETYCI 191
GSG+G+ L+ ++ + YP +I+ TYSV P S VSD VV+PYN++L++ +L N D +
Sbjct: 146 GSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVL 205
Query: 192 DNEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVP 362
DN AL I L NPT+ N LVS MS TT LR+PG +N DL + +++P
Sbjct: 206 DNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIP 262
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 32.3 bits (70), Expect = 0.024
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 163 SKTQMKPTA*TTRRSLTSVIEPLKFLIPHTVT 258
S TQ+K T+ S+T+V +PLKFL PH T
Sbjct: 75 SLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFT 106
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 27.9 bits (59), Expect = 0.52
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 87 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALFDICYRTLKVP 239
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 0.52
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 37 SSQRSVKSTPTE-S*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLT 213
+S S+ PT S T T SSP P T + T + +S T + PT T S T
Sbjct: 200 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSST 259
Query: 214 SVIEP 228
S+ P
Sbjct: 260 SIPIP 264
Score = 27.5 bits (58), Expect = 0.69
Identities = 26/94 (27%), Positives = 38/94 (40%)
Frame = +1
Query: 31 PFSSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSL 210
P++S V STP + T S+ P TP ++ S ST + T + T TT S+
Sbjct: 480 PYTST-PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 538
Query: 211 TSVIEPLKFLIPHTVT*TTWCR*PCLALPPASGS 312
P+ T TT P + P S +
Sbjct: 539 LYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSN 572
Score = 25.8 bits (54), Expect = 2.1
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = +1
Query: 31 PFSSQRSVKSTPTES*THTQSS--PRPKYQTPSSNPTMQFSLSTS*S---KTQMKPTA*T 195
P + + TPT T T S+ P P T S+ + LSTS S T + PT +
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 196 TRRSLTSVIEPLKFLIPHTVT*TTWCR*PCLALPPASGSPVS 321
T +T + P P T T T P + +P++
Sbjct: 406 T-TPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLA 446
Score = 25.4 bits (53), Expect = 2.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 52 VKSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLTSVIEPL 231
V STP + T S+ P TP ++ S ST + T + T TT S+ P+
Sbjct: 545 VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI 604
Score = 25.4 bits (53), Expect = 2.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +1
Query: 37 SSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLTS 216
SS V STP + T S+ TP ++P S ST S P T+ +TS
Sbjct: 576 SSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTS 635
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 0.69
Identities = 27/94 (28%), Positives = 44/94 (46%)
Frame = +1
Query: 55 KSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLTSVIEPLK 234
++T T + T S P T S+ T+ S S+S S T P++ T TS +
Sbjct: 569 ETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSS--TLSMTTSHLSSSS 626
Query: 235 FLIPHTVT*TTWCR*PCLALPPASGSPVS*MRIS 336
+ + ++ R ++LPP++GS S RIS
Sbjct: 627 --VHSSSAHSSSSRSSSMSLPPSAGSSTSLQRIS 658
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 3.7
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 37 SSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLTS 216
SS S S+ T S + + SS + SS+PT S +S S + PT+ ++ S +S
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSS 311
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 3.7
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 156 QLVENTDETYCIDNEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 335
Q+ NTD + N L+ RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 336 RKLAVNMV 359
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 3.7
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 37 SSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMQFSLSTS*SKTQMKPTA*TTRRSLTS 216
++ S S+P+ S T T +SP + SS+ + S S+S S + ++ ++ S +S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 3.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 135 NAVLSIHQLVENTDETYCIDNEALFDICYRTLKVPNPTYGDLN-HLVSLTMSGVTTCL 305
N S+ + +EN + + AL D+ + +K + T DLN L SLT+ T +
Sbjct: 550 NTNQSLKKNLENGRAEFRLKEIALIDLANQQIKNQDKTIHDLNTELCSLTLDYCNTAV 607
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 132 YNAVLSIHQLVENTDETYCIDNEALFDICYRTLKVPNPT 248
Y AVL + +L +NT +++F++ + L+ P T
Sbjct: 144 YAAVLILKELAKNTSTLIYAHIDSIFELLWHGLRDPKVT 182
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 258 LNHLVSLTMSGVTTCLRFPGQLN 326
L HLV + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 134 QCSSLYPPASRKHR*NLLHRQRG 202
Q SSL+P +SR+H + H RG
Sbjct: 201 QLSSLHPSSSRRHLISTPHVNRG 223
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 171 TDETYCIDNEALFDICYRTLKVPNPTYGDLNHLVS 275
T Y + E +DIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.2 bits (50), Expect = 6.4
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 19 PVWAPFSSQRSVKSTPTES*-THTQSSPRPKYQTPSSN 129
P AP S TP S HT P P QT SSN
Sbjct: 348 PPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSN 385
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 132 YNAVLSIHQLVENTDETYCI 191
+N L+++ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 32 PSHLKDP*RVPRQNHEHILSRPLAQSIRHRR 124
P H +P RQ H+H S+ + +S R R
Sbjct: 74 PHHASNPHPNSRQKHQHQTSKSVPRSQRFSR 104
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 6.4
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 84 YSVVPSPKVSDTVVEPYNAVLSIH--QLVENTDETYCIDNEALFDICYRTLKVPNPTYGD 257
YSVV S + ++V +P + L IH Q VE +T E L D + K P+P +
Sbjct: 311 YSVVSSDEDVESVRDPDDGTLPIHSTQTVEEPIDTKA--GEKLTD----SSKQPSPPVAE 364
Query: 258 --LNHLVSLTMSGVTTCLRFPGQLN 326
N S + G T ++ G N
Sbjct: 365 HFSNETFSASPKGAETDVKSEGSNN 389
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 66 DRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY---CIDNEA 203
D+ S+V T++EP + + H+L E +TY +D+EA
Sbjct: 62 DKFEEVESLVYEFSTPSTLIEPNYLLTAWHELWEELQDTYMTPILDSEA 110
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 162 VENTDETYCIDNEALFDICYRTLKVPNPTYGDLNHLVSLTMSGVTT 299
+EN ++ ID+ + ++L NP++GD+ V+LT V++
Sbjct: 1 MENQVSSFLIDSPMEWKTYMKSLSDDNPSFGDVT--VNLTKISVSS 44
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 145 RTAL*GSTTVSDTLGEGTTEYVFMILSGYSSRIFEMRR 32
R A+ + + D EY+ ++ GY R+ E RR
Sbjct: 242 RLAIDAFSALRDLSANRFPEYLLLVAGGYDIRVSENRR 279
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 87 SVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALFDI 215
SV SPK + Y AV +IH++ +T + E L+ I
Sbjct: 272 SVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAI 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 28 APFSSQRSVK--STPTES*THTQSSPRPKYQTPSS 126
AP S + S + PT S ++ SP P +Q PS+
Sbjct: 142 APASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSA 176
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 365 EWHHVHCQLAEI 330
EWH V C LAE+
Sbjct: 649 EWHFVSCHLAEM 660
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 105 KVSDTVVEPYNAVLSIHQLVENTDETYC 188
K +D V E + A+ ++H L+EN E +C
Sbjct: 1012 KSNDPVDESFLAIEAVHLLIENF-EKFC 1038
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,838
Number of Sequences: 5004
Number of extensions: 34953
Number of successful extensions: 157
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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