Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C10
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 93 4e-21
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 93 4e-21
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 31 0.026
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.14
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 2.3
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 2.3
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 2.3
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 24 4.0
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 23 5.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 23 5.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 23 5.3
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 23 9.2
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 23 9.2
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 23 9.2
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 23 9.2
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 93.5 bits (222), Expect = 4e-21
Identities = 46/76 (60%), Positives = 52/76 (68%)
Frame = +2
Query: 35 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRR 214
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+T HLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 215 LIHSQVRGISVKLQEE 262
+ VRGIS KLQEE
Sbjct: 61 IQRGPVRGISFKLQEE 76
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 93.5 bits (222), Expect = 4e-21
Identities = 46/76 (60%), Positives = 52/76 (68%)
Frame = +2
Query: 35 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRR 214
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+T HLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 215 LIHSQVRGISVKLQEE 262
+ VRGIS KLQEE
Sbjct: 61 IQRGPVRGISFKLQEE 76
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 31.1 bits (67), Expect = 0.026
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 235 SHLGVYETSHQMDGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 86
SH+ + +T+ + DG P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 0.14
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 250 LNRDSSHLGVYETSHQMDGEPSNFVAKRLSRNDSNFLTYPFIGIE 116
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.6 bits (51), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 138 VRKLLSFLLSLFATKLLGSPSI**DVSYTPRCEESLLSFKK 260
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 2.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 99 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 188
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 2.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 240 IPRTWECMRRLIKWMVNPAILLRRGLVGMIA 148
+P + I+WMVN L+R G + IA
Sbjct: 388 LPTFHDSASEAIRWMVNKGQLVRSGSIYQIA 418
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 23.8 bits (49), Expect = 4.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 182 IAGFTIHLMRRLIHS 226
+ FT+ L+RRL+HS
Sbjct: 171 VCAFTLELVRRLLHS 185
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 143 EIAIIPTKPLRNKIAGFTIHLMRRLIHSQVR 235
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 88 FDYNLRRFFYGLSPNTTHDCGDVSCLN 8
FD N RF+ G NT H C D++ L+
Sbjct: 97 FDKNGSRFYTGSLDNTIH-CWDLNGLS 122
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 145 NCYHSY*ASSQQNCWVHHPFDETSH 219
+ YH+ A + W H F TSH
Sbjct: 232 HAYHASMAPKRSGSWRHTNFHSTSH 256
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 22.6 bits (46), Expect = 9.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 134 ICEEIAIIPTKPLRNKIAGFTIH 202
+ EIA++P+ P RN+ F ++
Sbjct: 153 LMNEIALMPSPPSRNEQPAFCVN 175
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 22.6 bits (46), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 105 LLLTSIPIKGYVRKLLSFLLSLFATKL 185
LL IP +++LLSF LS TKL
Sbjct: 284 LLSHCIPPTTILKELLSFFLSKVDTKL 310
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 22.6 bits (46), Expect = 9.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 214 TSHQMDGEPSNFVAKRLSRNDSN 146
TS M G PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 130 FIGIEVKSKPSVVFFDYNLRRFFYGLSPNTTH 35
F+GI S +F ++F+ L P+ TH
Sbjct: 206 FVGITGGRPRSAHYFYARQNQYFFYLDPHCTH 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,343
Number of Sequences: 5004
Number of extensions: 17518
Number of successful extensions: 59
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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