Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C10
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 96 3e-21
03_01_0066 - 537729-538163 95 9e-21
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 31 0.096
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 2.7
06_03_1207 + 28418473-28421073 26 3.6
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112... 26 4.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 26 4.8
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 25 6.3
12_01_0394 - 3105306-3106596,3107815-3107861 25 8.3
07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729... 25 8.3
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865... 25 8.3
>10_07_0174 + 13815478-13815903
Length = 141
Score = 96.3 bits (229), Expect = 3e-21
Identities = 44/76 (57%), Positives = 55/76 (72%)
Frame = +2
Query: 35 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRR 214
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFT HLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 215 LIHSQVRGISVKLQEE 262
+ VRGIS+KLQEE
Sbjct: 61 IQRGPVRGISLKLQEE 76
>03_01_0066 - 537729-538163
Length = 144
Score = 94.7 bits (225), Expect = 9e-21
Identities = 43/76 (56%), Positives = 55/76 (72%)
Frame = +2
Query: 35 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRR 214
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+ HLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 215 LIHSQVRGISVKLQEE 262
+ VRGIS+KLQEE
Sbjct: 61 IQRGPVRGISLKLQEE 76
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 31.5 bits (68), Expect = 0.096
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 253 KLNRDSSHLGVYET----SHQMDGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 86
+LNRD + L V++ S Q D +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 85 DYN 77
YN
Sbjct: 187 SYN 189
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 107 TLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRRLIH 223
+L F NKR+CEE P+ N AG +H +IH
Sbjct: 1257 SLFFRANKRVCEEWFSRICDPMLN--AGLALHCNDAVIH 1293
>06_03_1207 + 28418473-28421073
Length = 866
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 252 SLTEIPRTWECMRRLIKWMVNPAILLRRGLV 160
+L E+ TW+ + R++K +NP + L+
Sbjct: 677 NLIELDITWQLLERMVKHGLNPTVTTYSSLI 707
>08_02_0754 -
20810449-20810517,20810965-20811036,20811145-20811252,
20811326-20811378,20811401-20811514,20812833-20812962
Length = 181
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 208 HQMDGEPSNFVAKRLSR--NDSNFLTYP 131
H DG P N+VA+++ + SNF +P
Sbjct: 48 HLFDGHPPNYVAEKVYKYTKKSNFSRFP 75
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 76 LRRFFYGLSPNTTHDCGDVSCL 11
L+R Y S +T+H+ GD+ C+
Sbjct: 280 LKRIHYVPSASTSHEDGDIKCI 301
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 252 SLTEIPRTWECMRRLIKWMVNPAILL 175
S+ ++P T C++ L++ +VN A+ L
Sbjct: 622 SVEKLPSTIGCLKNLVRLLVNEAVKL 647
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 232 HLGVYETSHQMDGEPS 185
HLG E +HQM EPS
Sbjct: 227 HLGENENAHQMRSEPS 242
>07_03_1540 -
27570605-27571375,27571474-27572748,27572769-27572921,
27572923-27573159
Length = 811
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 247 NRDSSHLGVYETSHQMDGEPSNFV 176
N DSS + + + SH D +P+ V
Sbjct: 668 NLDSSEISLTDVSHYFDSDPTKLV 691
>03_02_0842 + 11682332-11683802,11683858-11683940,11684751-11686553,
11687783-11688633,11689230-11689299,11689597-11689641
Length = 1440
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 247 NRDSSHLGVYETSHQMDGEPSNFV 176
N DSS + + + SH D +P+ V
Sbjct: 1232 NLDSSEISLTDVSHYFDSDPTKLV 1255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,376,035
Number of Sequences: 37544
Number of extensions: 100954
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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