Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C10
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    94   1e-20
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   0.60 
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    26   4.2  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    26   4.2  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64849-8|AAC48047.2|  376|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan sulph...    25   9.8  
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    25   9.8  
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    25   9.8  
AF016684-7|AAB66206.1|  319|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 44/76 (57%), Positives = 52/76 (68%)
 Frame = +2

Query: 35  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRR 214
           M RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+  HLMRR
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 215 LIHSQVRGISVKLQEE 262
           +    VRGIS+KLQEE
Sbjct: 61  IERGPVRGISIKLQEE 76


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 184 NFVAKRLSRNDSNFLTYPFIGI 119
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 184 NFVAKRLSRNDSNFLTYPFIGI 119
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 181 FVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 86
           FV   +SR  SN L YP +   V S+P   +F
Sbjct: 445 FVMDDVSRRTSNLLRYPDLHWRVFSRPGKRYF 476


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 188 GFTIHLMRRLIHSQVRGISVKLQEE 262
           GFT  L  RLI +++R +   ++EE
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEE 495


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 246 TEIPRTWECMRRLIKWMVNPAILLRRGLVGMIAIS 142
           +E  +  +CM    KW++ PA L  RGLV    +S
Sbjct: 14  SECGKDQKCMPLEDKWLLVPAFLKVRGLVKQHLVS 48


>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 95  YTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTIHLMRRL 217
           + RL     TN ++CE IA+     +   +A FT+  +R +
Sbjct: 333 FCRLIARLKTNYQLCELIAVPCYSHMLRLLAEFTVQSLRMM 373


>U64849-8|AAC48047.2|  376|Caenorhabditis elegans Hypothetical
           protein K04A8.1 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 243 EIPRTWECMRRLIKW 199
           E PR WE +  LIKW
Sbjct: 159 EKPRNWENLSELIKW 173


>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 119 DTNKRICEEIAIIPTKPLRN 178
           +T K++CE++ ++ +K L+N
Sbjct: 507 ETRKKVCEDLNMLESKKLKN 526


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 119 DTNKRICEEIAIIPTKPLRN 178
           +T K++CE++ ++ +K L+N
Sbjct: 493 ETRKKVCEDLNMLESKKLKN 512


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 228 WECMRRLIKWMVNPAILLRR 169
           WEC+R L+ W+     + RR
Sbjct: 624 WECVRHLLNWLWIGRYIARR 643


>AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan
           sulphotransferase protein 3 protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 130 FIGIEVKSKPSVVFFDYNLRRFFYGLSPNTTHDCGDVSCLNL 5
           F+G+E    PS + FDYN  + F+     T   C  +S  NL
Sbjct: 234 FLGLERSITPSQLVFDYN--KGFFCFRKTTKVRCLGLSKENL 273


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 125 NKRICEEIAIIPTKPLRNKIAGFTI 199
           N++  EE+A +P+K +R++ A F I
Sbjct: 40  NRQKVEEVASLPSKVVRDQAARFQI 64


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 125 NKRICEEIAIIPTKPLRNKIAGFTI 199
           N++  EE+A +P+K +R++ A F I
Sbjct: 40  NRQKVEEVASLPSKVVRDQAARFQI 64


>AF016684-7|AAB66206.1|  319|Caenorhabditis elegans Hypothetical
           protein F45C12.7 protein.
          Length = 319

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 88  FDYNLRRFFYGLSPNTTHD-CGD 23
           FDYN  R  Y L+PN   + C D
Sbjct: 100 FDYNYLRCKYSLTPNCCQEKCSD 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,601,054
Number of Sequences: 27780
Number of extensions: 91692
Number of successful extensions: 249
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)