Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C09
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    47   5e-07
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    44   4e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    28   0.27 
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   1.1  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   1.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   2.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   3.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   3.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    24   4.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   5.8  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    24   5.8  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    23   7.7  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    23   7.7  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 47.2 bits (107), Expect = 5e-07
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +3

Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
           TAK+G GI+AM V+RP+ I+K+ IPVVMAGI
Sbjct: 33  TAKAGVGISAMGVLRPDLIVKNTIPVVMAGI 63



 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 134 PIYGPFFGVMGAASAIIFSSLGAAY 208
           P+Y PFFGVMG  +AI+F+S GAAY
Sbjct: 7   PVYAPFFGVMGCTAAIVFASFGAAY 31


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +3

Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
           TA +G GIAA+   RPE +MKS+IPVVM+GI
Sbjct: 33  TALAGRGIAAVGAFRPEIVMKSLIPVVMSGI 63



 Score = 34.3 bits (75), Expect = 0.004
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 134 PIYGPFFGVMGAASAIIFSSLGAAY 208
           PIY  FFG  G  ++++FS LGA Y
Sbjct: 7   PIYSSFFGFAGVCASMVFSCLGAGY 31


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 137 LDFRPFFLNVGVFTGPKNSDDYLHTL 60
           +DF P    V   TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 261 QAASPPWRQYRCLTWLCTY 205
           Q ++PPW    C +WL  Y
Sbjct: 448 QGSAPPWHYIPCQSWLVWY 466


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 45  VVSWSECVQIVIRVFGTCKYSHIQEKWPK 131
           V S    V I +  F   + SH+QEKW K
Sbjct: 96  VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 149 KVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDK 30
           KV  +D +  FL       PKN +DY++ L    +   D+
Sbjct: 249 KVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDR 288


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 126 PKIQSMDLSLELWGRRLPSSSAPLVLHMCTA 218
           P     +  L +   RL SS AP+ +H+C A
Sbjct: 206 PTTMRSNNGLSILASRLKSSEAPMHVHICHA 236


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 76  SSEFLGPVNTPTFKKNG 126
           SS +L P  +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 102 YSHIQEKWPKIQSMDLSLELWG 167
           + ++QE W K++ +DL+  L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 150 SLELWGRRLPSSSAPLVLHMCTA 218
           + E+W  + P+   P +LHM  A
Sbjct: 608 NFEVWAAQKPTIEPPTILHMLKA 630


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 88  LGPVNTPTFKKNGRKSNLWTFLWSYGGGVCHHLQ 189
           L PV+  TFKK+G+      + +++GG  CH L+
Sbjct: 61  LPPVDVLTFKKSGK-----PYYFAFGG--CHRLR 87


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 122 FFLNVGVFTGPKNSDDY 72
           F  N+G+ +GPK  D Y
Sbjct: 24  FLKNIGIISGPKLVDTY 40


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 108 HIQEKWPKIQSMDLSLELWGRRLPS 182
           H   KW    S D ++++W  R PS
Sbjct: 92  HCDGKWLATSSEDGTVKVWDMRAPS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,269
Number of Sequences: 5004
Number of extensions: 33632
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)