Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C09
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 54 2e-08
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 54 2e-08
05_01_0043 - 295041-295173,296252-296537,296616-296697 54 2e-08
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 54 2e-08
01_07_0267 + 42410174-42410252,42410679-42411097 52 1e-07
06_01_0817 - 6185881-6187074 30 0.41
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 29 0.55
11_06_0661 - 26009838-26010950,26011302-26011802 29 0.72
08_01_0804 - 7774631-7775152,7775985-7776083 29 0.95
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 1.7
05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460... 27 2.2
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 2.9
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 27 3.8
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 27 3.8
12_02_0842 - 23588826-23589198,23589548-23590203 26 5.1
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 26 5.1
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 26 5.1
11_06_0725 - 26703701-26704669 26 6.7
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 26 6.7
03_03_0278 - 16126803-16129049 26 6.7
11_01_0605 + 4821363-4823246 25 8.9
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 25 8.9
02_04_0572 + 23972319-23973683 25 8.9
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741... 25 8.9
01_05_0354 - 21302497-21302964,21303780-21304151 25 8.9
01_01_0019 + 141084-141631,142191-142431,142563-142680,142749-14... 25 8.9
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKSG G+A+M VMRPE +MKSI+PVVMAG+
Sbjct: 34 TAKSGVGVASMGVMRPELVMKSIVPVVMAGV 64
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 146 PFFGVMGAASAIIFSSLGAAY 208
PFFG +GAASA++FS +GAAY
Sbjct: 12 PFFGFLGAASALVFSCMGAAY 32
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKSG G+A+M VMRPE +MKSI+PVVMAG+
Sbjct: 34 TAKSGVGVASMGVMRPELVMKSIVPVVMAGV 64
Score = 38.7 bits (86), Expect = 9e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 146 PFFGVMGAASAIIFSSLGAAY 208
PFFG +GAASA+IFS +GAAY
Sbjct: 12 PFFGFLGAASALIFSCMGAAY 32
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKSG G+A+M VMRPE +MKSI+PVVMAG+
Sbjct: 35 TAKSGVGVASMGVMRPELVMKSIVPVVMAGV 65
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 146 PFFGVMGAASAIIFSSLGAAY 208
PFFG +GAASA++FS +GAAY
Sbjct: 13 PFFGFLGAASALVFSCMGAAY 33
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKSG G+A+M VMRPE +MKSI+PVVMAG+
Sbjct: 36 TAKSGVGVASMGVMRPELVMKSIVPVVMAGV 66
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2
Query: 146 PFFGVMGAASAIIFSSLGAAY 208
PFFG +GAA+A++FS +GAAY
Sbjct: 14 PFFGFLGAAAALVFSCMGAAY 34
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TA+SG G+A M VMRPE +MKSI+PVVMAG+
Sbjct: 34 TARSGVGVAHMGVMRPELVMKSIVPVVMAGV 64
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 140 YGPFFGVMGAASAIIFSSLGAAY 208
+ PF G +GAA A++FS +GAAY
Sbjct: 10 FAPFLGFIGAALALVFSCMGAAY 32
>06_01_0817 - 6185881-6187074
Length = 397
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 166 GGVCHHLQLPWCCICAQPSQAPVLPPW 246
G H P C C P+ PV PPW
Sbjct: 20 GSAAHAGHAPLCRSCGAPTTTPVPPPW 46
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 123 WPKIQ-SMDLSLELWGRRLPSSSAPL 197
WP ++ S D LEL RRLPS++ PL
Sbjct: 126 WPSVKWSSDCLLELQHRRLPSTAPPL 151
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 106 PTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCICAQPSQAPVLPPWR 249
P F+K K +L + + G + HHL P + S +PV+ W+
Sbjct: 273 PPFRKEKEKEHLLVYEYMENGSLDHHLHGP----TSSSSSSPVMASWK 316
>08_01_0804 - 7774631-7775152,7775985-7776083
Length = 206
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 190 AEDDGRRRPHNSKERSIDWIFGHFS*MWEYLQVP--KTLMTICTH 62
A+ G R+ H + + D IFG + + +++P +TL+T+C H
Sbjct: 139 AQGHGGRQLHQIRYTTSDRIFGDYPLLSRKVRMPSPRTLLTVCHH 183
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 129 KIQSMDLSLELWGRRLPSSSAPLVLHMCTAKSGTGIAAMA 248
+I D L+L R LP+S L L +C S G+A++A
Sbjct: 134 RITVTDDDLDLVSRSLPASFRDLSLLLCDGFSSAGLASIA 173
>05_03_0501 +
14744913-14745107,14745545-14745571,14746002-14746097,
14746479-14746769
Length = 202
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 161 MGAASAIIFSSLGAAYVHSQVRHRYCRHGGDAA*ADHEIHHSRCH 295
+GAASA+ SS G ++ R G+ D ++ CH
Sbjct: 76 LGAASAVAVSSSGGRRATGEIGQRQVESAGELGLTDKQLQMWFCH 120
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 30 FVCAK-VVSWSECVQIVIRVFGTC 98
F+CA VV WS + + + VFGTC
Sbjct: 553 FMCANTVVLWSGPLAMTVLVFGTC 576
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = -3
Query: 208 ICSTKGAEDDGRRRP---HNSKERSIDWIF 128
+CSTKG E R P SKE DW+F
Sbjct: 175 VCSTKGVEVKDRFHPFLLDASKETFPDWLF 204
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 149 FFGVMGAASAIIFSSLGAAYVHSQVRHRYCRHGGDAA*ADH 271
FFGV + + A Y+HSQV GD A H
Sbjct: 1118 FFGVFDGHGGRVVAKFCAKYLHSQVLRSEAYSAGDLGTAVH 1158
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 226 APVLPPWR*CGLSRS*NPSFPLS 294
AP+LPPW S S +PS LS
Sbjct: 162 APILPPWMSSSPSSSSSPSVTLS 184
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 114 QEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMCTAKSGTG 233
+E W ++ + +S PSSS PL+ HMC TG
Sbjct: 97 EEAWDELIAR-ISGFFTDENFPSSSHPLIGHMCVTFRRTG 135
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 158 VMGAASAIIFSSLGAAYVHSQVRH--RYCRHGGDAA 259
++ A A F ++G + V H RYCR GGD A
Sbjct: 738 ILSARWAYAFPAMGTVFGLCIVIHSVRYCRAGGDLA 773
>11_06_0725 - 26703701-26704669
Length = 322
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 280 MDFMICSGRITAMAAIPVPDLAVHICSTKGA 188
MD + C TA+A +P PDL H+ + G+
Sbjct: 175 MDIIRCEAATTAVA-VPPPDLHRHLAALLGS 204
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 235 IPVPDLAVHICSTKGAEDDGRRRPH 161
+P ++A CS+KG++ RRRP+
Sbjct: 788 VPSSEVAGGDCSSKGSDSKKRRRPN 812
>03_03_0278 - 16126803-16129049
Length = 748
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 140 YGPFFGVMGAASAIIFSSLGAAYVHSQVRHRY 235
+GPF GAASA SS AA + V H Y
Sbjct: 274 WGPFSRTAGAASATA-SSAAAAQAANVVHHTY 304
>11_01_0605 + 4821363-4823246
Length = 627
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 129 KIQSMDLSLELWGRRLPSSSAPLVLHMCTAKSGTGIAAMAVMRPEQIMKSI 281
K++ +DLS ++PSS A L MC S ++ P+ +M ++
Sbjct: 512 KLERLDLSKNYLSGQVPSSVANLERLMCLFLSDNNLSGPLPELPKWVMVNV 562
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 128 RPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTD 33
+P F NV V T PK S D L +P N D
Sbjct: 526 KPLF-NVKVTTSPKKSADQLSNDSPHNVVHLD 556
>02_04_0572 + 23972319-23973683
Length = 454
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 126 PKIQSMDLSLELWGRRLPSSSAPL 197
PK++ +DLS +G ++PSS A L
Sbjct: 413 PKLRQLDLSHNNFGGKIPSSLANL 436
>02_02_0498 -
10973243-10973345,10973850-10973882,10974104-10974166,
10975934-10976004,10976703-10976789,10976870-10976983,
10977395-10977508,10977784-10977844,10978608-10978923,
10979031-10979721,10979948-10980073,10980180-10980247,
10980314-10980449,10981109-10981238,10981266-10981382,
10981614-10981763,10982158-10982266,10982584-10982701,
10984143-10984168,10984219-10984256,10986267-10986373
Length = 925
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 143 HR-LDFRPFFLNVGVFTGPKNSDDYLHTLTP 54
HR LD + ++G GPK + LHT+TP
Sbjct: 82 HRILDIKQHLQDLGKENGPKLWEYILHTVTP 112
>01_05_0354 - 21302497-21302964,21303780-21304151
Length = 279
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 267 SAQAASPPWRQYRCLTWLCTYAAPRELKMMADAAPI 160
S++ PWR R W T + + + ADA P+
Sbjct: 163 SSEKGVTPWRAVRSSAWCATPPSRTVVLVHADAFPV 198
>01_01_0019 +
141084-141631,142191-142431,142563-142680,142749-142789,
143114-143146,145028-145082,145179-145339,145450-145719,
146106-146184,146311-146375,146507-146575
Length = 559
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 232 PVPDLAVHICSTKGAEDDGRRRPHNSKERSIDW 134
P PD + ED RRR H ER + W
Sbjct: 33 PDPDPPTSWTAVAALEDQQRRRLHRIWERGVAW 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,969
Number of Sequences: 37544
Number of extensions: 269943
Number of successful extensions: 695
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -