Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C09
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 53 5e-08
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 53 5e-08
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 51 2e-07
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 51 2e-07
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 51 2e-07
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 51 2e-07
U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical pr... 28 1.1
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 26 4.5
U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical pr... 26 4.5
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 26 6.0
AL032632-5|CAA21585.1| 297|Caenorhabditis elegans Hypothetical ... 26 6.0
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 26 6.0
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical pr... 25 7.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 25 7.9
AL031633-19|CAA21031.1| 710|Caenorhabditis elegans Hypothetical... 25 7.9
AF022985-16|AAV28323.1| 307|Caenorhabditis elegans Hypothetical... 25 7.9
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAK+GTGIA+MAV RP+ +MK+IIPVVMAGI
Sbjct: 45 TAKAGTGIASMAVARPDLVMKAIIPVVMAGI 75
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 128 ENPIYGPFFGVMGAASAIIFSSLGAAY 208
E +YGPFFG +G SA+ F++ G+AY
Sbjct: 17 EQAMYGPFFGSLGVTSAMAFAAAGSAY 43
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAK+GTGIA+MAV RP+ +MK+IIPVVMAGI
Sbjct: 45 TAKAGTGIASMAVARPDLVMKAIIPVVMAGI 75
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 128 ENPIYGPFFGVMGAASAIIFSSLGAAY 208
E +YGPFFG +G SA+ F++ G+AY
Sbjct: 17 EQAMYGPFFGSLGVTSAMAFAAAGSAY 43
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKS GI +M VMRPE IMKS+IPV+MAGI
Sbjct: 37 TAKSAVGICSMGVMRPELIMKSVIPVIMAGI 67
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2
Query: 104 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAY 208
+ + + AE Y PFFG MGAASA IF+ LGAAY
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAY 35
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKS GI +M VMRPE IMKS+IPV+MAGI
Sbjct: 37 TAKSAVGICSMGVMRPELIMKSVIPVIMAGI 67
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2
Query: 104 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAY 208
+ + + AE Y PFFG MGAASA IF+ LGAAY
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAY 35
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKS GI +M VMRPE IMKS+IPV+MAGI
Sbjct: 37 TAKSAVGICSMGVMRPELIMKSVIPVIMAGI 67
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2
Query: 104 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAY 208
+ + + AE Y PFFG MGAASA IF+ LGAAY
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAY 35
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 213 TAKSGTGIAAMAVMRPEQIMKSIIPVVMAGI 305
TAKS GI +M VMRPE IMKS+IPV+MAGI
Sbjct: 37 TAKSAVGICSMGVMRPELIMKSVIPVIMAGI 67
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +2
Query: 104 LPHSRKMAENPIYGPFFGVMGAASAIIFSSLGAAY 208
+ + + AE Y PFFG MGAASA IF+ LGAAY
Sbjct: 1 MSYDLETAERAAYAPFFGYMGAASAQIFTVLGAAY 35
>U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical
protein F53A9.8 protein.
Length = 87
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 305 DTRHDNGNDGFHDLLRPHH---RHGGNTGA*LGCAHMQHQ 195
+ H++G DG H H +HGGN A CA QHQ
Sbjct: 23 EDHHEHGADGEHVHHAGDHCDTQHGGNHQAGEHCAKTQHQ 62
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 204 HMCTAKSGTGIA---AMAVMRPEQIMKSII 284
+MCTAK+ +G+A A V+RP+ I I
Sbjct: 2381 YMCTAKNDSGVATSSAQLVVRPKTIAPDFI 2410
>U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical
protein F53A9.1 protein.
Length = 77
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +2
Query: 125 AENPIYGPFFGVMGAASAIIFSSLGAAYVHSQVRHRYCRHGGDAA*ADHEIHHSRCHG 298
A P+YG G M + + + G + H H + G A H HH HG
Sbjct: 18 APPPVYGAP-GYMPPQTVHVHTDGGHHHGHHHHHHGFLHELGHAMTGHHHHHHGHHHG 74
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 223 DLAVHICSTKGAEDDGRRRPHNSKERSIDWIFGHF 119
DL V + S GA G+R + +W FG F
Sbjct: 64 DLWVEVVSVDGAFGRGKRTIRSGDRAKREWSFGQF 98
>AL032632-5|CAA21585.1| 297|Caenorhabditis elegans Hypothetical
protein Y11D7A.9 protein.
Length = 297
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 27 IFVCAKVVSWSECVQIVIRVFGTCKYSHI 113
I + + ++ W +C+ VF C+YS +
Sbjct: 224 ILIASFILYWRKCITWAYDVFALCEYSGV 252
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 160 YGGGVCHHLQLPWCCICAQPSQAPVLPP 243
YG V + P CC C Q P PP
Sbjct: 91 YGAPVTNSEPAPTCCSCQQGPAGPPGPP 118
>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
protein ZK593.4 protein.
Length = 1477
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 75 VIRVFGTCKYSHIQEKWPKIQSMDLSLELWGRRLPSSSAPLV 200
+++ FG C+ + EKW + L E R +PS+ L+
Sbjct: 161 IVQNFGGCEEVNEDEKWRDVAREYLPKEQMARGVPSAFINLI 202
>Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical
protein F41E7.3 protein.
Length = 402
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 154 WSYGGGVCHHLQL 192
W +GGG+CH L L
Sbjct: 103 WIFGGGLCHGLPL 115
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 140 YGPFFGVMGAASAIIFSSLGAAYVHSQVRHRYCRHGGDAA*ADHEIHHSRCHG 298
+G G GA GA + H+ H + H GD H +HH HG
Sbjct: 609 HGVHHGHHGAGYGAHHGHHGAHHHHAP-HHEHHEHHGDHHHGSHGVHHGH-HG 659
>AL031633-19|CAA21031.1| 710|Caenorhabditis elegans Hypothetical
protein Y39A1A.22 protein.
Length = 710
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 225 LTWLCTYAAPRELKMMADAAPITPKKGP*IGFSAIFLECG 106
LTW+ + A P+E K +A + +GP + F +IFL CG
Sbjct: 244 LTWIASPARPQEPKWVA----VRLFRGPLLLFLSIFL-CG 278
>AF022985-16|AAV28323.1| 307|Caenorhabditis elegans Hypothetical
protein T15B7.1 protein.
Length = 307
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 103 TPTFKKNGRKSNLWTFLWSYGGG 171
T T NG+++ +W + +YGGG
Sbjct: 94 TYTILVNGKETEVWCDMQTYGGG 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,342
Number of Sequences: 27780
Number of extensions: 203195
Number of successful extensions: 481
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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