Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C08
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   157   5e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    74   1e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    69   2e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    44   7e-06
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.47 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   5.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  157 bits (382), Expect = 5e-40
 Identities = 68/83 (81%), Positives = 78/83 (93%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 187
           EWIP+NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEG
Sbjct: 343 EWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEG 402

Query: 188 MDEMEFTEAESNMNDLVSEYQQY 256
           MDEMEFTEAESNMNDLVSEYQQY
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAF 163
           +W P   K  +CD PP+ ++         A   + N+T+I E + R+  +F  M+ ++AF
Sbjct: 345 DWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAF 404

Query: 164 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 253
           +HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
 Frame = +2

Query: 8   EWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTAMFRRKAF 163
           +W P   K  +C  PP+ +          A   + N+T+I E + R+  +F  M+ ++AF
Sbjct: 349 DWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAF 408

Query: 164 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 253
           +HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 409 VHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
 Frame = +2

Query: 11  WIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 181
           W P +++ A+    P      +++   + N T+I  LFKR  +Q+  + +R AFL  Y  
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKK 410

Query: 182 EGMDEMEFTEAESNMN---DLVSEYQ 250
           E + E +  E +S+ +   DL++EY+
Sbjct: 411 EAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.47
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 89  NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 196
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 83   IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 244
            + N   +  L+K + E+F+ +F RK  L WY   G+      E + N+N   SE
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +2

Query: 2   HEEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQF 136
           H++ +P  V  ++ ++PP  ++   ++ G     +++F+   E+F
Sbjct: 588 HDQ-VPRQVFASMLNLPPEVIRRKGSWTGKKDPREDMFRSRFEKF 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,143
Number of Sequences: 5004
Number of extensions: 15897
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)