Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C07
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.26
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 0.45
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 3.2
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 24 5.5
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 24 5.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 5.5
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 24 7.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 24 7.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 7.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 23 9.6
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 23 9.6
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 23 9.6
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 28.7 bits (61), Expect = 0.26
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 167 HPSHPASLAPHAELTPSASADIFTHN 90
HP H +SL PH + PS AD HN
Sbjct: 183 HPPHHSSLPPHMGVDPSTMAD--AHN 206
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 0.45
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 177 ENGTAAEATNGTSNKSNDNGVPFKDAF--KAFSKFGDPKSDGKLITLSQSDK 326
E A+ G++N SN N D + K F DPKS L+ + Q D+
Sbjct: 120 EGAKIAQPAIGSANASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDE 171
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 32 KSVYTTHTEFDLIYHKP*IYCV*ICL 109
K++YTT+T+F+ + H+ +Y + CL
Sbjct: 538 KAIYTTYTDFEDLDHR--LYSIKKCL 561
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 119 KGLTPRVEQVTQDVKDVND 175
+G T +EQV Q++KDV++
Sbjct: 88 QGATDLIEQVEQEMKDVSE 106
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +1
Query: 64 SHISQALNILCVNMSADAEGVNSACGASD 150
+H+S ++++C +MS +A+G + D
Sbjct: 169 AHVSLKMDVMCQSMSFNADGTRLVTTSRD 197
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 115 AEGVNSACGASDAGCEGCQ*SRTEQLRKQPTELLTKATTTAYRSRMPSKHSQNSVIP 285
A V + GA+ G G + T QPT +T+ +++ Y + + S ++V+P
Sbjct: 1367 ATEVQTTTGAT--GTAGTETQVTTATEVQPTTAVTETSSSGYYTTIVSSTVVSTVVP 1421
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 199 QPTELLTKATTTAYRSRM-PSKHSQNSVI 282
Q T+ L+K TTA M PS NSVI
Sbjct: 537 QSTDSLSKNDTTASNGSMTPSSSQNNSVI 565
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 67 HISQ-ALNILCVNMSADAEGVNSACGASDAGCE 162
HI + L L NM A A +++AC D CE
Sbjct: 227 HIEEYRLEFLKTNMWAYANIISTACVKDDESCE 259
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 322 SLCDRVMSLPSDLGSPNFENALKASLN 242
SL R++ L S + + +FE++L+ASLN
Sbjct: 607 SLLQRIL-LNSKVSNESFEDSLQASLN 632
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 266 ECFEGILERYAVVVAFVRSSVGCFRSCSVL 177
+C GI+ RY + V + G C +L
Sbjct: 1257 QCIAGIIRRYPIDVYHINDYHGALAPCYLL 1286
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 1 EYE-DEESVPPKECLYHPHRI*SHISQA 81
+YE D + KE Y PH I SHIS++
Sbjct: 17 DYEKDPKEYVDKEKGYFPHVITSHISKS 44
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 76 VIYEIKFGVGGIDTLWA 26
++ E++ GVG TLWA
Sbjct: 300 IVDEVQTGVGSTGTLWA 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,333
Number of Sequences: 5004
Number of extensions: 23068
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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