Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C07
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    30   0.53 
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589...    27   3.8  
10_01_0071 - 905696-909028                                             27   3.8  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   5.0  
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    26   6.6  
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           26   8.7  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 109  ADAEGVNSACGASDAGCEGCQ*SRTEQLRKQPTEL----LTKATTTAYRSRMPSKHSQNS 276
            A+ EG+ SA  A +  CE  + + T+    + T+L    + ++ TTA++S +PS   Q  
Sbjct: 2156 ANQEGMLSAAAAQNLQCETQRLTSTQDAPFERTDLSGIPVPRSITTAHQSVVPSWDLQTG 2215

Query: 277  VIPS 288
            V P+
Sbjct: 2216 VEPT 2219


>11_06_0631 -
           25656885-25657000,25658591-25658658,25658957-25658996,
           25659742-25659820,25659918-25661707,25662030-25662037,
           25662305-25662367,25662504-25662820
          Length = 826

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 191 SCSVL-DH*HPSHPASL-APHAELTPSASADIFTHNIFRAC 75
           SCS+  +H +PSHPAS  A +   +P+A AD   H   R C
Sbjct: 60  SCSLTGEHPNPSHPASASASNFFSSPAACAD--PHPASRGC 98


>10_01_0071 - 905696-909028
          Length = 1110

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 195 EATNGTSNKSNDNGVPFKDAFKAFSKFGDPKSDGKLITLS-QSDK 326
           EATNG S  S      F + FKA  K G   +  KLI LS Q D+
Sbjct: 819 EATNGFSTASLIGSGGFGEVFKATLKDGSCVAIKKLIHLSYQGDR 863


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 217 TKATTTAYRSRMPSKHSQNSVIPS 288
           T ATTT +R  +PS H   +V PS
Sbjct: 7   TTATTTHHRVLLPSHHHHRAVPPS 30


>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 185 SVLDH*HPSHPASLAPHAELTPSASADIFTHNIFRACDI*DQIRC--GWYRHSLGGTLSS 12
           S +D   PS+P +L  H +   S+S ++    I R C     I C  G + H L   LSS
Sbjct: 181 SSVDFGFPSYPTNLIDHGQTFFSSSRELRERAIGRVCHGLILITCTHGIHLHKLRVFLSS 240


>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 334 FIHLSLCDRVMSLPSDLGSPNFENALKASLN 242
           F+ L++C+   ++P+DLG     + L+ S N
Sbjct: 348 FLDLAMCNLTGAIPADLGQIGHLSVLRLSTN 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,207,384
Number of Sequences: 37544
Number of extensions: 153650
Number of successful extensions: 487
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)